RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 SLC2A11Q9BYW1 496 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 SLC7A8Q9UHI5 535 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 GJD2Q9UKL4 321 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 CTHP32929 405 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 ATP4BP51164 291 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 POLR2HP52434 150 aaKnown RBP12.64□□□□□ -0.39
COL1A1-201ENST00000225964 GSTM4Q03013 218 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 POU4F2Q12837 409 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 TUBB3Q13509 450 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 SHQ1Q6PI26 577 aaKnown RBP12.64□□□□□ -0.39
COL1A1-201ENST00000225964 ZFAND4Q86XD8 727 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 PLD6Q8N2A8 252 aaKnown RBP12.64□□□□□ -0.39
COL1A1-201ENST00000225964 CNN2Q99439 309 aaKnown RBP12.64□□□□□ -0.39
COL1A1-201ENST00000225964 ZNF649Q9BS31 505 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 ACTR6Q9GZN1 396 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 TMEM165Q9HC07 324 aa12.64□□□□□ -0.39
COL1A1-201ENST00000225964 H3BML4 177 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 K7ERQ8 282 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 RBBP9O75884 186 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 YES1P07947 543 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 IL1RNP18510 177 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NDUFV2P19404 249 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 C6orf120Q7Z4R8 191 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 CLEC1AQ8NC01 280 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 OR5B2Q96R09 309 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 B3GALT1Q9Y5Z6 326 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NID2Q14112 1375 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NEURL4Q96JN8 1562 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 MYADML2A6NDP7 307 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 EEF1E1O43324 174 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 SLC2A5P22732 501 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 GCH1P30793 250 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 HK3P52790 923 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TUBA1BP68363 451 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TUBA4AP68366 448 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 PPA1Q15181 289 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 USF2Q15853 346 aaPredicted RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 SLC18B1Q6NT16 456 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TUBA3EQ6PEY2 450 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 LARP4Q71RC2 724 aaKnown RBP eCLIP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TUBA1AQ71U36 451 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 FAM46AQ96IP4 442 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 FCRL3Q96P31 734 aaPredicted RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 SECISBP2Q96T21 854 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 DOHHQ9BU89 302 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NANSQ9NR45 359 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 HIF3AQ9Y2N7 669 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 CCDC163A0A0D9SF12 145 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 YY2O15391 372 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 RP2O75695 350 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TIMP1P01033 207 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 PROS1P07225 676 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 MSL3P1P0C860 447 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 TMEM236Q5W0B7 351 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 ZNF367Q7RTV3 350 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 ABRACLQ9P1F3 81 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 XRN1Q8IZH2 1706 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 LPLP06858 475 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 ZNF43P17038 809 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 GRIN2CQ14957 1233 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NADK2Q4G0N4 442 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 OR5T1Q8NG75 326 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 NEIL3Q8TAT5 605 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 YARS2Q9Y2Z4 477 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 A0A0G2JPF8 293 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 HNRNPCL3B7ZW38 293 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 RTCAO00442 366 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 SCAMP2O15127 329 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 CA3P07451 260 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 SLC10A3P09131 477 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 HNRNPCL4P0DMR1 293 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 S100PP25815 95 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 ZNF829Q3KNS6 432 aaPredicted RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 ERMP1Q7Z2K6 904 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 PRR22Q8IZ63 422 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 HS3ST5Q8IZT8 346 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 FAM46BQ96A09 425 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 METTL2AQ96IZ6 378 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 RBM24Q9BX46 236 aaKnown RBP12.63□□□□□ -0.39
COL1A1-201ENST00000225964 LIPT1Q9Y234 373 aa12.63□□□□□ -0.39
COL1A1-201ENST00000225964 PRAMEF2O60811 474 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 SIM1P81133 766 aaPredicted RBP12.62□□□□□ -0.39
COL1A1-201ENST00000225964 APOFQ13790 326 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 UGT3A2Q3SY77 523 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 TCTE1Q5JU00 501 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 TRIM46Q7Z4K8 759 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 IGFN1Q86VF2 1251 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.62□□□□□ -0.39
COL1A1-201ENST00000225964 OR10T2Q8NGX3 314 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 IMP4Q96G21 291 aaKnown RBP12.62□□□□□ -0.39
COL1A1-201ENST00000225964 TMEM185BQ9H7F4 350 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 MRPL15Q9P015 296 aaKnown RBP12.62□□□□□ -0.39
COL1A1-201ENST00000225964 ACSL6Q9UKU0 697 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 CD70P32970 193 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 ARSFP54793 590 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 MCCD1P59942 119 aaPredicted RBP12.62□□□□□ -0.39
COL1A1-201ENST00000225964 ACTA2P62736 377 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 ACTG2P63267 376 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 TMEM201Q5SNT2 666 aa12.62□□□□□ -0.39
COL1A1-201ENST00000225964 LYSMD4Q5XG99 296 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms