RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ECHDC3Q96DC8 303 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 CNN2Q99439 309 aaKnown RBP12.94□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF559Q9BR84 538 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 KCNN3Q9UGI6 736 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 MON2Q7Z3U7 1717 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 ZCWPW2A0A1B0GU75 182 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 H7C417 338 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 K7ERQ8 282 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 SOCS2O14508 198 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 BPNT1O95861 308 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 HRGP04196 525 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 RIDAP52758 137 aaKnown RBP12.94□□□□□ -0.34
SF3A1-201ENST00000215793 CST6Q15828 149 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF423Q2M1K9 1284 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 AAK1Q2M2I8 961 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 NKAPLQ5M9Q1 402 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 TMPPEQ6ZT21 453 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 TMEM19Q96HH6 336 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 BIRC8Q96P09 236 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 ACSL6Q9UKU0 697 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 UBR1Q8IWV7 1749 aa12.94□□□□□ -0.34
SF3A1-201ENST00000215793 URB1O60287 2271 aaKnown RBP12.94□□□□□ -0.34
SF3A1-201ENST00000215793 SLC1A7O00341 560 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 AXIN1O15169 862 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 BMP2P12643 396 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 NTSR1P30989 418 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 GNMTQ14749 295 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 METTL2BQ6P1Q9 378 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 KLHDC8AQ8IYD2 350 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 SLC22A8Q8TCC7 542 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 TRUB1Q8WWH5 349 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PAAF1Q9BRP4 392 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 SYT4Q9H2B2 425 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 MTHFD2LQ9H903 347 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 SMOXQ9NWM0 555 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 FBXL3Q9UKT7 428 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 DNMT3AQ9Y6K1 912 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 RTCAO00442 366 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PTGESO14684 152 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PCDH17O14917 1159 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 SMAD9O15198 467 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 UGDHO60701 494 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 ETFAP13804 333 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 GNRHRP30968 328 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 MTNR1AP48039 350 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 RUNX3Q13761 415 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 TOR1AIP2Q8NFQ8 470 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 OR4K5Q8NGD3 323 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 NAA11Q9BSU3 229 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 FAM53CQ9NYF3 392 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 ENPP4Q9Y6X5 453 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 KCPQ6ZWJ8 1503 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 H3BUI4 141 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 GABBR2O75899 941 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 RPS26P62854 115 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 GRM7Q14831 915 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 NNATQ16517 81 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 BTBD16Q32M84 506 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 UNQ6126/PRO20091Q6UXV3 157 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 KLBQ86Z14 1044 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 CBARPQ8N350 705 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 OR8K5Q8NH50 307 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PGAM5Q96HS1 289 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 TGM7Q96PF1 710 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 HOXD1Q9GZZ0 328 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 NUFIP1Q9UHK0 495 aaKnown RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 KLHL21Q9UJP4 597 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 VSTM2BA6NLU5 285 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 RETP07949 1114 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PIGFQ07326 219 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 C1orf61Q13536 156 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 COMMD6Q7Z4G1 85 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 TRIM73Q86UV7 250 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 PHC2Q8IXK0 858 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 APCDD1Q8J025 514 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 TCEAL3Q969E4 200 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 GPR174Q9BXC1 333 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 ACOT13Q9NPJ3 140 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 SDR39U1Q9NRG7 319 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-201ENST00000215793 LMO7Q8WWI1 1683 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 ROBO1Q9Y6N7 1651 aa12.93□□□□□ -0.34
SF3A1-201ENST00000215793 RGS9O75916 674 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-201ENST00000215793 FGF4P08620 206 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 UCHL1P09936 223 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 RORAP35398 523 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 ERVPABLB-1P60509 514 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 TCTE1Q5JU00 501 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 BEND4Q6ZU67 534 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 LAS2Q8IYD9 372 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 KDM1BQ8NB78 822 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF701Q9NV72 531 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-201ENST00000215793 F5H0A9 414 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF35P13682 527 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 DNASE1P24855 282 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 RAB11FIP2Q7L804 512 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 C16orf78Q8WTQ4 265 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 NECTIN4Q96NY8 510 aa12.92□□□□□ -0.34
SF3A1-201ENST00000215793 OR1F2PQ96R84 312 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms