RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 CCDC63Q8NA47 563 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 C14orf79Q96F83 325 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 FBXL20Q96IG2 436 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 TMEM237Q96Q45 408 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 PELOQ9BRX2 385 aaKnown RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 CNPPD1Q9BV87 410 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 LYARQ9NX58 379 aaKnown RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 RNF6Q9Y252 685 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 TNPO3Q9Y5L0 923 aaKnown RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 FIGNL2A6NMB9 653 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 FAM90A27PA6NNH2 459 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 G3V2L1 256 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 BCKDKO14874 412 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 OR10H2O60403 315 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 PLIN3O60664 434 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 ERLIN1O75477 346 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 PRKRAO75569 313 aaKnown RBP17.29■□□□□ 0.36
PNKP-213ENST00000599543 IGHG3P01860 377 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 RPS17P08708 135 aaKnown RBP17.29■□□□□ 0.36
PNKP-213ENST00000599543 NR2F6P10588 404 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 CRHR1P34998 444 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 SLC18A2Q05940 514 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 PMPCAQ10713 525 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 GXYLT1Q4G148 440 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 UNC50Q53HI1 259 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 BEND6Q5SZJ8 279 aaPredicted RBP17.29■□□□□ 0.36
PNKP-213ENST00000599543 SLC29A4Q7RTT9 530 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 OR5M9Q8NGP3 310 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 ATP6V1E2Q96A05 226 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 GAL3ST4Q96RP7 486 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 TMEM109Q9BVC6 243 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 PNPLA3Q9NST1 481 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 SLC17A7Q9P2U7 560 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 TMCO1Q9UM00 188 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 LIPGQ9Y5X9 500 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 NCKAP5O14513 1909 aa17.29■□□□□ 0.36
PNKP-213ENST00000599543 A0A0A6YYD5 115 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ATP6AP2A0A1C7CYW4 349 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 NKX2-6A6NCS4 301 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 HRKO00198 91 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 PROM1O43490 865 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ATP6AP2O75787 350 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 MYL2P10916 166 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ATP5F1P24539 256 aaPredicted RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 ACVR2AP27037 513 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 CCT5P48643 541 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 HERVK_113P63132 956 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ERVK-8P63133 956 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 KCNJ2P63252 427 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 TLE4Q04727 773 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 FOXO1Q12778 655 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 TBL3Q12788 808 aaKnown RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 CUL3Q13618 768 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ZNF678Q5SXM1 525 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 SLC22A10Q63ZE4 541 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 METTL2BQ6P1Q9 378 aaKnown RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 ZNF585AQ6P3V2 769 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ZYG11AQ6WRX3 759 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 RNF111Q6ZNA4 994 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 DGAT2L6Q6ZPD8 337 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 TRILQ7L0X0 811 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 LCA5Q86VQ0 697 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 NUDT13Q86X67 352 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 DND1Q8IYX4 353 aaKnown RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 SLC15A4Q8N697 577 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 CCNYL1Q8N7R7 359 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 BANPQ8N9N5 519 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ACBD4Q8NC06 268 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 LILRB4Q8NHJ6 448 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 TRPC4APQ8TEL6 797 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ZNF483Q8TF39 744 aaPredicted RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 SPACA9Q96E40 222 aaPredicted RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 APOPT1Q96IL0 206 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ERVK-6Q9BXR3 956 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ZNF717Q9BY31 904 aaPredicted RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 LDAHQ9H6V9 325 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 WDR41Q9HAD4 459 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 TUBA8Q9NY65 449 aaPredicted RBP17.28■□□□□ 0.36
PNKP-213ENST00000599543 GRID1Q9ULK0 1009 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 ERVK-19Q9WJR5 959 aa17.28■□□□□ 0.36
PNKP-213ENST00000599543 FREM3P0C091 2139 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 CCDC151A5D8V7 595 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 GLOD5A6NK44 160 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 AQP7O14520 342 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 RGS16O15492 202 aaPredicted RBP17.27■□□□□ 0.36
PNKP-213ENST00000599543 TMPRSS11DO60235 418 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 EEDO75530 441 aaKnown RBP17.27■□□□□ 0.36
PNKP-213ENST00000599543 SUPT7LO94864 414 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 CLDN9O95484 217 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 GPR75O95800 540 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 FAM58BPP0C7Q3 252 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 BSGP35613 385 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 PIGAP37287 484 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 MAN2A2P49641 1150 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 NEK2P51955 445 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 CCNG1P51959 295 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 NUP107P57740 925 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 TRAF3Q13114 568 aa17.27■□□□□ 0.36
PNKP-213ENST00000599543 ZNF267Q14586 743 aaPredicted RBP17.27■□□□□ 0.36
PNKP-213ENST00000599543 SLC10A1Q14973 349 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms