RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SRSF5Q13243 272 aaKnown RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 CLCA4Q14CN2 919 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 RGS21Q2M5E4 152 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 MSANTD1Q6ZTZ1 278 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 AQP12AQ8IXF9 295 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 WDR36Q8NI36 951 aaKnown RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 GRHL3Q8TE85 626 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 DCBLD2Q96PD2 775 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 MCCC2Q9HCC0 563 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CCDC59Q9P031 241 aaKnown RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 TRIP11Q15643 1979 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 H0YIV9 168 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 FOXE1O00358 373 aaPredicted RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 ADAM23O75077 832 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CSTAP01040 98 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 MT-ND1P03886 318 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 LAMP1P11279 417 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 ANPEPP15144 967 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CD53P19397 219 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 DDCP20711 480 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 HOXD12P35452 270 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 PER3P56645 1201 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 SYT16Q17RD7 645 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CCSMST1Q4G0I0 132 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 C6orf132Q5T0Z8 1188 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 DIO2Q92813 273 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 RELTQ969Z4 430 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 ZNF354BQ96LW1 612 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 SMAD5Q99717 465 aaKnown RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 NLGN3Q9NZ94 848 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 MLXQ9UH92 298 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 RIIAD1A6NNX1 92 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 TARM1B6A8C7 271 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 ACOT7O00154 380 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 HAT1O14929 419 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 RAP2AP10114 183 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CKMT2P17540 419 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 TCN2P20062 427 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 NXPH1P58417 271 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 GGTA1PQ4G0N0 100 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIG3-216ENST00000593099 HSDL2Q6YN16 418 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 FAM83HQ6ZRV2 1179 aaPredicted RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 CDADC1Q9BWV3 514 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 FAM192AQ9GZU8 254 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 RPRD1BQ9NQG5 326 aaKnown RBP9.33□□□□□ -0.92
LIG3-216ENST00000593099 ADAM29Q9UKF5 820 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 EMCNQ9ULC0 261 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 CSNK1G3Q9Y6M4 447 aa9.33□□□□□ -0.92
LIG3-216ENST00000593099 PTGES3LE9PB15 166 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 RGS5O15539 181 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GPR37L1O60883 481 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GIMD1P0DJR0 217 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 XRCC1P18887 633 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 BCKDHBP21953 392 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GPR3P46089 330 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 RRADP55042 308 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CSNK1G2P78368 415 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ADRM1Q16186 407 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 LACTB2Q53H82 288 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 RABL3Q5HYI8 236 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 LARP4Q71RC2 724 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIG3-216ENST00000593099 ZNF595Q8IYB9 648 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 VWA5B2Q8N398 1253 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 LRRC20Q8TCA0 184 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CTRCQ99895 268 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CHID1Q9BWS9 393 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ACPTQ9BZG2 426 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 OR52A5Q9H2C5 316 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 MYNNQ9NPC7 610 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 C5AR2Q9P296 337 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 SPATA2Q9UM82 520 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 MAGED1Q9Y5V3 778 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 BRWD1Q9NSI6 2320 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 TDRD15B5MCY1 1934 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 CABIN1Q9Y6J0 2220 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GPR75O95800 540 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CD160O95971 181 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 HOXC4P09017 264 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 ICAM2P13598 275 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 PRG2P13727 222 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ACPPP15309 386 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 FOXA1P55317 472 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ACTR3P61158 418 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 TRAF3Q13114 568 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CLEC14AQ86T13 490 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 SMYD1Q8NB12 490 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 LSM14AQ8ND56 463 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 OR51Q1Q8NH59 317 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 SNIP1Q8TAD8 396 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 AURKBQ96GD4 344 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 SORBS1Q9BX66 1292 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 OR51I1Q9H343 314 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CD93Q9NPY3 652 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 C14orf105Q9NVL8 296 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 DHCR7Q9UBM7 475 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 LILRA5A6NI73 299 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 A6NL46 340 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ZNF726A6NNF4 738 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms