RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 TOXO94900 526 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 AIFM1O95831 613 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 CLPSP04118 112 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 PIK3R1P27986 724 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 MSX1P28360 303 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ECHS1P30084 290 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 MAGEA5P43359 124 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 HERVK_113P63132 956 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ERVK-8P63133 956 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 RPP38P78345 283 aaKnown RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ID2Q02363 134 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 IFT88Q13099 833 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 B3GNT6Q6ZMB0 384 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 OR4N5Q8IXE1 308 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF615Q8N8J6 731 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 OR4K14Q8NGD5 310 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 OR52B6Q8NGF0 335 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ATP6V1E2Q96A05 226 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 TTYH2Q9BSA4 534 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 SORBS1Q9BX66 1292 aaKnown RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ERVK-6Q9BXR3 956 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 VPS11Q9H270 941 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 PROK2Q9HC23 129 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 KCNJ16Q9NPI9 418 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 TUBA8Q9NY65 449 aaPredicted RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 B4GALT7Q9UBV7 327 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 KCNN3Q9UGI6 736 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 TRPS1Q9UHF7 1281 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 DMGDHQ9UI17 866 aaKnown RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 CNOT11Q9UKZ1 510 aaKnown RBP13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 PSME2Q9UL46 239 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 ERVK-19Q9WJR5 959 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 RNF6Q9Y252 685 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 STK38LQ9Y2H1 464 aa13.35□□□□□ -0.27
SMARCE1-216ENST00000580419 MTORP42345 2549 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 C2CD3Q4AC94 2353 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 MED13LQ71F56 2210 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 TRGV5A0A0B4J1U4 118 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 C2orf92A0A1B0GVN3 265 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 TRIM3O75382 744 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 URI1O94763 535 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 ATP1B1P05026 303 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 SNRPAP09012 282 aaKnown RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 MAN2A2P49641 1150 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 NRG3P56975 720 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 NAA20P61599 178 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 MAP4K2Q12851 820 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF267Q14586 743 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 RPS6KA2Q15349 733 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 SF3B4Q15427 424 aaKnown RBP eCLIP13.34□□□□□ -0.275e-11■■□□□ 13.3
SMARCE1-216ENST00000580419 UAP1Q16222 522 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 SLC25A35Q3KQZ1 300 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 WLSQ5T9L3 541 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 DGAT2L6Q6ZPD8 337 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 GALNT12Q8IXK2 581 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 SAMD14Q8IZD0 417 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 RNF175Q8N4F7 328 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 NEIL3Q8TAT5 605 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 ZNF483Q8TF39 744 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 CHTF18Q8WVB6 975 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 DCAKDQ8WVC6 231 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 ADIPOR1Q96A54 375 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 PPWD1Q96BP3 646 aaKnown RBP13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 XPR1Q9UBH6 696 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 CES1P1Q9UKY3 287 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 SNX6Q9UNH7 406 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 NCKAP5O14513 1909 aa13.34□□□□□ -0.27
SMARCE1-216ENST00000580419 LRRC14BA6NHZ5 514 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 GOLGA6L10A6NI86 522 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 LRRC3CA6NJW4 275 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 FAM166BA8MTA8 275 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 NPIPA2E9PIF3 369 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 NPIPA3F8WFD2 350 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 HRKO00198 91 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 SH3BGRLO75368 114 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PDE9AO76083 593 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ACSL3O95573 720 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 CTAGE8P0CG41 777 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 CPMP14384 443 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PORP16435 677 aaPredicted RBP13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 GSTM5P46439 218 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 DNASE1L1P49184 302 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 KCNJ2P63252 427 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PMPCAQ10713 525 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 SNTA1Q13424 505 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 NHSL2Q5HYW2 709 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 RIPPLY2Q5TAB7 128 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 SLC48A1Q6P1K1 146 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 C3P1Q6ZMU1 363 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 MEX3BQ6ZN04 569 aaKnown RBP13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 TRMT10CQ7L0Y3 403 aaKnown RBP13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 MILR1Q7Z6M3 343 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 CTAGE4Q8IX94 777 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 DMRTC2Q8IXT2 367 aaPredicted RBP13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 CLYBLQ8N0X4 340 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 C17orf53Q8N3J3 647 aaPredicted RBP13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 OR5M3Q8NGP4 307 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 ACMSDQ8TDX5 336 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 CTHRC1Q96CG8 243 aa13.33□□□□□ -0.28
SMARCE1-216ENST00000580419 PHF21BQ96EK2 531 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms