RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 DGAT2L6Q6ZPD8 337 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ZNF550Q7Z398 422 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 P4HA3Q7Z4N8 544 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 BTLAQ7Z6A9 289 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 TXLNBQ8N3L3 684 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CNEP1R1Q8N9A8 125 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ACOT4Q8N9L9 421 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 C2CD4AQ8NCU7 369 aaPredicted RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SRFBP1Q8NEF9 429 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 FAM83FQ8NEG4 500 aaPredicted RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 OR1J4Q8NGS1 313 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 OR14L1PQ8NHC6 308 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 RDH11Q8TC12 318 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SPPL2AQ8TCT8 520 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 KCNC2Q96PR1 638 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 SLC39A3Q9BRY0 314 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 TBCDQ9BTW9 1192 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ANGPTL4Q9BY76 406 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 REG4Q9BYZ8 158 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 WWTR1Q9GZV5 400 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 NT5DC2Q9H857 520 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 METTL7AQ9H8H3 244 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 RYDENQ9NUL5 291 aaKnown RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 ZNF701Q9NV72 531 aaPredicted RBP6.66□□□□□ -1.34
VPS4A-203ENST00000564399 IKZF3Q9UKT9 509 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 MAPRE3Q9UPY8 281 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 CAPN6Q9Y6Q1 641 aa6.66□□□□□ -1.34
VPS4A-203ENST00000564399 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 A0A1W2PNV4 684 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 NPEPPSL1A6NEC2 478 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 A8MV72 311 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 C16orf97H3BN30 126 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CD5LO43866 347 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TNFSF13O75888 250 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TBX6O95947 436 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 KRT14P02533 472 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 FGGP02679 453 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 AHSGP02765 367 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CCDC175P0C221 793 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PAX1P15863 534 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ALOX15P16050 662 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 KRT15P19012 456 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CHMP24386 653 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 GABRB3P28472 473 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PTPN6P29350 595 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TLX1P31314 330 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 UGT2B10P36537 528 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CASP3P42574 277 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 SSR2P43308 183 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 MAGEA6P43360 314 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 STARP49675 285 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 HNMTP50135 292 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 NRG3P56975 720 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 SLC37A1P57057 533 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 SIRPAP78324 504 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 IGLV3-21P80748 117 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 OCRLQ01968 901 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PCDH1Q08174 1060 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 BIKQ13323 160 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 EBPQ15125 230 aaKnown RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 HIST2H2ACQ16777 129 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 C18orf21Q32NC0 220 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ANKRD34AQ69YU3 496 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 HIST2H2AA3Q6FI13 130 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ADNP2Q6IQ32 1131 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ZNF793Q6ZN11 406 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 FRA10AC1Q70Z53 315 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CHMP1BQ7LBR1 199 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 VN1R5Q7Z5H4 357 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TRIM42Q8IWZ5 723 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PRR22Q8IZ63 422 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ST13P4Q8IZP2 240 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 BBOF1Q8ND07 529 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 MCUQ8NE86 351 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 MAIP1Q8WWC4 291 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 ZBED6CLQ96FA7 236 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TRMT61AQ96FX7 289 aaKnown RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PGM2Q96G03 612 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 TMEM41AQ96HV5 264 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CAPS2Q9BXY5 557 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 AMBRA1Q9C0C7 1298 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PHACTR1Q9C0D0 580 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 PITHD1Q9GZP4 211 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 OPN3Q9H1Y3 402 aaPredicted RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 RPF2Q9H7B2 306 aaKnown RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 SNX15Q9NRS6 342 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 CLCF1Q9UBD9 225 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 FETUBQ9UGM5 382 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 VWA7Q9Y334 891 aa6.65□□□□□ -1.34
VPS4A-203ENST00000564399 YLPM1P49750 1951 aaKnown RBP6.65□□□□□ -1.34
VPS4A-203ENST00000564399 MALRD1Q5VYJ5 2156 aa6.65□□□□□ -1.35
VPS4A-203ENST00000564399 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 C2orf72A6NCS6 295 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 NCF1BA6NI72 391 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 OR6C76A6NM76 312 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 NCF1CA8MVU1 366 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PLOD2O00469 737 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 TMCC2O75069 709 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 CDH16O75309 829 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 SOX30O94993 753 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms