RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 HOXB6P17509 224 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 SDC2P34741 201 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 RAB8AP61006 207 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 DUSP2Q05923 314 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 SNAPC1Q16533 368 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 KHDRBS2Q5VWX1 349 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 TMPRSS11AQ6ZMR5 421 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 CCDC149Q6ZUS6 474 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZNF367Q7RTV3 350 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 SCAIQ8N9R8 606 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 MINDY2Q8NBR6 621 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 SIMC1Q8NDZ2 872 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 UBASH3BQ8TF42 649 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZFPM2Q8WW38 1151 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 KLHL6Q8WZ60 621 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 PDXPQ96GD0 296 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 OR2A14Q96R47 310 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 DCLRE1CQ96SD1 692 aaKnown RBP14.24□□□□□ -0.13
USP28-214ENST00000545540 SPATA7Q9P0W8 599 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 COMMD3Q9UBI1 195 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 KCNK6Q9Y257 313 aa14.24□□□□□ -0.13
USP28-214ENST00000545540 ZNF106Q9H2Y7 1883 aaKnown RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 CFAP54Q96N23 3096 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 DENND4CQ5VZ89 1909 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 FOXE1O00358 373 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 PSMA1P25786 263 aaKnown RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 CRYBB2P43320 205 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 RAB25P57735 213 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 C21orf58P58505 322 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 PRKCDQ05655 676 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 RBBP4Q09028 425 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 CCDC85BQ15834 202 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 ZNF79Q15937 498 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 CCDC190Q86UF4 302 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 OR4K5Q8NGD3 323 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 OR8K5Q8NH50 307 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 RAD9AQ99638 391 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 MAPKAP1Q9BPZ7 522 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 SIRT3Q9NTG7 399 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 KLHL3Q9UH77 587 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 IRAK3Q9Y616 596 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 WDR87Q6ZQQ6 2873 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 ARID1BQ8NFD5 2236 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 IGLON5A6NGN9 336 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 SAGE2PA6NJ88 616 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 MYL12BO14950 172 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 DYRK3O43781 588 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 SNRNP200O75643 2136 aaKnown RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 PCDH8O95206 1070 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 KRT8P05787 483 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 DDCP20711 480 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 OLR1P78380 273 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 DMPKQ09013 629 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 HEPACAMQ14CZ8 416 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 FBXO43Q4G163 708 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 TMC5Q6UXY8 1006 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 COL26A1Q96A83 441 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 TMEM80Q96HE8 168 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 MAGEB10Q96LZ2 347 aaPredicted RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 TEFMQ96QE5 360 aaKnown RBP14.23□□□□□ -0.13
USP28-214ENST00000545540 CFL2Q9Y281 166 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 N6AMT1Q9Y5N5 214 aa14.23□□□□□ -0.13
USP28-214ENST00000545540 CPSF4LA6NMK7 179 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 UGT2B17O75795 530 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 CCL5P13501 91 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ACP5P13686 325 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ACADLP28330 430 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 BSGP35613 385 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 GSTM5P46439 218 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 SNRPNP63162 240 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 MRPS15P82914 257 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 GPAT3Q53EU6 434 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 SMPDL3AQ92484 453 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ZNF486Q96H40 463 aaPredicted RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 DIRAS2Q96HU8 199 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 TXNDC15Q96J42 360 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 COQ10AQ96MF6 247 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 FYTTD1Q96QD9 318 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 FNDC11Q9BVV2 318 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 SPATA9Q9BWV2 254 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 CDCA4Q9BXL8 241 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 WBP11Q9Y2W2 641 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 TRANK1O15050 2925 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 A0A1W2PQL4 384 aaPredicted RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 PI15O43692 258 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 RFX2P48378 723 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 MAN2A2P49641 1150 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 NCBP2P52298 156 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP28-214ENST00000545540 HMGA2P52926 109 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 RPS25P62851 125 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 CDC20Q12834 499 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 PAMR1Q6UXH9 720 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 FAM129CQ86XR2 697 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 PHC2Q8IXK0 858 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 POP5Q969H6 163 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 NACC2Q96BF6 587 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 CRELD1Q96HD1 420 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 DPH7Q9BTV6 452 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 HDHD5Q9BXW7 423 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms