RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ZNF888P0CJ79 500 aaPredicted RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 ACSL1P33121 698 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 HYAL2Q12891 473 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 GBX1Q14549 363 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 C6orf132Q5T0Z8 1188 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 MLIPQ5VWP3 458 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 Q6ZSR6 202 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ABHD13Q7L211 337 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 FRMD1Q8N878 549 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ANKRD53Q8N9V6 530 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 FBXO15Q8NCQ5 510 aaPredicted RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 RLN3Q8WXF3 142 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RNF31Q96EP0 1072 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 C16orf58Q96GQ5 468 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 SLC38A3Q99624 504 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RHNO1Q9BSD3 238 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 TIMM29Q9BSF4 260 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 TPSD1Q9BZJ3 242 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RMI1Q9H9A7 625 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 IL20RAQ9UHF4 553 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 SSR3Q9UNL2 185 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ATG4BQ9Y4P1 393 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 EMC8O43402 210 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 EGFP01133 1207 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ITGAMP11215 1152 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 HNRNPA2B1P22626 353 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 DRD3P35462 400 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 BCL6P41182 706 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 PXNP49023 591 aaPredicted RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 SKP1P63208 163 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 KCNJ10P78508 379 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 FIGLAQ6QHK4 219 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 OR4K5Q8NGD3 323 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 CCL4L1Q8NHW4 92 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 GAB3Q8WWW8 586 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 KLHL6Q8WZ60 621 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RPL3LQ92901 407 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 MCHR1Q99705 422 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RSPH9Q9H1X1 276 aaPredicted RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 MARCH7Q9H992 704 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 STARD5Q9NSY2 213 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 MGAT4BQ9UQ53 548 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 WBP11Q9Y2W2 641 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 RPL36Q9Y3U8 105 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 HSPE1-MOB4S4R3N1 261 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 SLC16A6O15403 523 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 TBX1O43435 398 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 PAPLNO95428 1278 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 NUDT14O95848 222 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 CTHP32929 405 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 BMXP51813 675 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 GPR19Q15760 415 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 MINDY4Q4G0A6 757 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ARMC4Q5T2S8 1044 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 KDM4DQ6B0I6 523 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 RBM45Q8IUH3 476 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 SLC15A4Q8N697 577 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 METTL27Q8N6F8 245 aaPredicted RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 TSTD1Q8NFU3 115 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 OR2L3Q8NG85 312 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 OR13F1Q8NGS4 319 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 GSDMCQ9BYG8 508 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 GLIPR2Q9H4G4 154 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 SNTG1Q9NSN8 517 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 DDX28Q9NUL7 540 aaKnown RBP9.62□□□□□ -0.87
MCF2-209ENST00000520602 TBC1D29Q9UFV1 150 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 TEKT2Q9UIF3 430 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 PHF11Q9UIL8 331 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 ANKRD36A6QL64 1941 aa9.62□□□□□ -0.87
MCF2-209ENST00000520602 TRBV5-3A0A0A0MS03 114 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 TRBV4-1A0A0J9YWV2 114 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.61□□□□□ -0.87
MCF2-209ENST00000520602 SMIM30A4D0T7 59 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 PCDHGA12O60330 932 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 SEMA4FO95754 770 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 CENPAP49450 140 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 ADPRHP54922 357 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 COPZ1P61923 177 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 PPP2CBP62714 309 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 PPP2CAP67775 309 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 REEP5Q00765 189 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 SPCS2Q15005 226 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 TMEM196Q5HYL7 178 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 PRSS48Q7RTY5 328 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 SAMD14Q8IZD0 417 aaPredicted RBP9.61□□□□□ -0.87
MCF2-209ENST00000520602 ABHD11Q8NFV4 315 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 NDNFQ8TB73 568 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 SP7Q8TDD2 431 aaPredicted RBP9.61□□□□□ -0.87
MCF2-209ENST00000520602 OR1E3Q8WZA6 343 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 TP53INP1Q96A56 240 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 COX4I2Q96KJ9 171 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 LINC00615Q96LM1 132 aaPredicted RBP9.61□□□□□ -0.87
MCF2-209ENST00000520602 PRR14Q9BWN1 585 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 ANKHQ9HCJ1 492 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 OBP2AQ9NY56 170 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 MRPS33Q9Y291 106 aaKnown RBP9.61□□□□□ -0.87
MCF2-209ENST00000520602 SEC16AO15027 2179 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 CLCA1A8K7I4 914 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 GPR89AB7ZAQ6 455 aa9.61□□□□□ -0.87
MCF2-209ENST00000520602 GASTP01350 101 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms