RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TRPC4Q9UBN4 977 aa11.33□□□□□ -0.6
NUP54-202ENST00000502850 NDOR1Q9UHB4 597 aa11.33□□□□□ -0.6
NUP54-202ENST00000502850 ERGIC3Q9Y282 383 aa11.33□□□□□ -0.6
NUP54-202ENST00000502850 A0A0G2JPF8 293 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 HNRNPCL2B2RXH8 293 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 HNRNPCL3B7ZW38 293 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 K7EQS6 105 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 AIREO43918 545 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 OR10H3O60404 316 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 RECKO95980 971 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 RPLP0P05388 317 aaKnown RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 LCKP06239 509 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 HNRNPCL4P0DMR1 293 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 CSNK2A2P19784 350 aaPredicted RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 CHMP24386 653 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ATP5A1P25705 553 aaKnown RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 IFNA8P32881 189 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 TGFBR2P37173 567 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 OPRL1P41146 370 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 GSSP48637 474 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 RPS15AP62244 130 aaKnown RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 ALDH6A1Q02252 535 aaKnown RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 DLX2Q07687 328 aaPredicted RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 RGS1Q08116 209 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 LRRC32Q14392 662 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 MRM1Q6IN84 353 aaKnown RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 KIAA1211LQ6NV74 962 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 SYCE2Q6PIF2 218 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 CASP12Q6UXS9 341 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ZNF793Q6ZN11 406 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 SZRD1Q7Z422 152 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 CCDC103Q8IW40 242 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ACOT4Q8N9L9 421 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 GPR32P1Q8NGA4 272 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ZNF675Q8TD23 568 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ABTB1Q969K4 478 aaPredicted RBP11.32□□□□□ -0.6
NUP54-202ENST00000502850 GAL3ST3Q96A11 431 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ERLEC1Q96DZ1 483 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 RIPOR3Q96MK2 946 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 CDCA4Q9BXL8 241 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 ABCG4Q9H172 646 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 XKR8Q9H6D3 395 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 SLC6A20Q9NP91 592 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 AKIP1Q9NQ31 210 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 PRDM9Q9NQV7 894 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 AASSQ9UDR5 926 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 LIPT1Q9Y234 373 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 PCDHGA4Q9Y5G9 962 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 TICRRQ7Z2Z1 1910 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 MYO10Q9HD67 2058 aa11.32□□□□□ -0.6
NUP54-202ENST00000502850 hCG_2014768A0A024R1R8 64 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3DA0A087WVF3 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3IA0A087WXS9 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3EA0A087X179 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3KA0A087X1G2 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 A0A1W2PRQ8 180 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 PRSS38A1L453 326 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3FA6NER0 549 aaPredicted RBP11.31□□□□□ -0.6
NUP54-202ENST00000502850 PRR23AA6NEV1 266 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3LB9A6J9 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TLR4O00206 839 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 SYT5O00445 386 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 HAT1O14929 419 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 LINC01565O15544 149 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 EMC8O43402 210 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 MAN1A2O60476 641 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 AGR2O95994 175 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 GASTP01350 101 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3HP0C7X1 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 OCM2P0CE71 109 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 OCMP0CE72 109 aaPredicted RBP11.31□□□□□ -0.6
NUP54-202ENST00000502850 OR12D1P0DN82 309 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 HOXB2P14652 356 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 COL9A1P20849 921 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 GSTM3P21266 225 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 NR4A1P22736 598 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 MPIP34949 423 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 IFNGR2P38484 337 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 LIM2P55344 173 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 SEC13P55735 322 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 VBP1P61758 197 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 IRF3Q14653 427 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TMEM201Q5SNT2 666 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 SLX4IPQ5VYV7 408 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3GQ6DHY5 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3CQ6IPX1 549 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 ZNF425Q6IV72 752 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TCTN3Q6NUS6 607 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 SLC48A1Q6P1K1 146 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TUBA3EQ6PEY2 450 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 CD300LDQ6UXZ3 194 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 DEF8Q6ZN54 512 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 Q6ZPB1 254 aaPredicted RBP11.31□□□□□ -0.6
NUP54-202ENST00000502850 SLC46A3Q7Z3Q1 461 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 ZNF554Q86TJ5 538 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TRIM69Q86WT6 500 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 TBC1D3Q8IZP1 549 aaPredicted RBP11.31□□□□□ -0.6
NUP54-202ENST00000502850 AMER2Q8N7J2 671 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 IL17RCQ8NAC3 791 aa11.31□□□□□ -0.6
NUP54-202ENST00000502850 NDNFQ8TB73 568 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms