RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SEMA3DO95025 777 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 FBXO45P0C2W1 286 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 ENDOUP21128 410 aaKnown RBP19.84■□□□□ 0.77
USP40-215ENST00000484528 FRG2Q64ET8 278 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 RTL6Q6ICC9 239 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 B3GNT6Q6ZMB0 384 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 SLC15A4Q8N697 577 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 NOA1Q8NC60 698 aaKnown RBP19.84■□□□□ 0.77
USP40-215ENST00000484528 FRG2BQ96QU4 278 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 TTYH2Q9BSA4 534 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 SLC6A15Q9H2J7 730 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 ALKBH4Q9NXW9 302 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 BOKQ9UMX3 212 aaPredicted RBP19.84■□□□□ 0.77
USP40-215ENST00000484528 CHCHD2Q9Y6H1 151 aaPredicted RBP19.84■□□□□ 0.77
USP40-215ENST00000484528 HIVEP1P15822 2718 aa19.84■□□□□ 0.77
USP40-215ENST00000484528 POC1B-GALNT4F8VUJ3 575 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 SMIM24O75264 130 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 KLK1P06870 262 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 RBP1P09455 135 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 CT62P0C5K7 136 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 SLC35E2P0CK97 266 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 GLI4P10075 376 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 IGFBP2P18065 325 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 TSPAN8P19075 237 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 PIK3R1P27986 724 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 SERPINB3P29508 390 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 WHAMMP3Q1A5X7 153 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 METTL2BQ6P1Q9 378 aaKnown RBP19.83■□□□□ 0.77
USP40-215ENST00000484528 ISL2Q96A47 359 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 CXorf21Q9HAI6 301 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 MCCC2Q9HCC0 563 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 ZFP64Q9NPA5 681 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 PSD3Q9NYI0 1048 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 CNOT11Q9UKZ1 510 aaKnown RBP19.83■□□□□ 0.77
USP40-215ENST00000484528 IKBKGQ9Y6K9 419 aa19.83■□□□□ 0.77
USP40-215ENST00000484528 AKAP6Q13023 2319 aa19.83■□□□□ 0.76
USP40-215ENST00000484528 MED12Q93074 2177 aa19.83■□□□□ 0.76
USP40-215ENST00000484528 A0A1B0GTL3 188 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 C2orf92A0A1B0GVN3 265 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 OR6C76A6NM76 312 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 TRIM49D1C9J1S8 452 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 STX16-NPEPL1H3BU86 382 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 STX16O14662 325 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 SUSD5O60279 629 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 MSX1P28360 303 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 TRPC1P48995 793 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 C1orf185Q5T7R7 199 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 WLSQ5T9L3 541 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 BICRALQ6AI39 1079 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 TAOK1Q7L7X3 1001 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 CDH24Q86UP0 819 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 RELL1Q8IUW5 271 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 GALNT12Q8IXK2 581 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 TAGAPQ8N103 731 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 OR4F6Q8NGB9 312 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 ZNF592Q92610 1267 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 SARAFQ96BY9 339 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 FMO2Q99518 471 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 DOHHQ9BU89 302 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 NTMT1Q9BV86 223 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 FUT8Q9BYC5 575 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 FARSBQ9NSD9 589 aaKnown RBP19.82■□□□□ 0.76
USP40-215ENST00000484528 MED13LQ71F56 2210 aa19.82■□□□□ 0.76
USP40-215ENST00000484528 A0A0G2JNJ9 132 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 PPP6CO00743 305 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 ADH7P40394 386 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 SERPINB9P50453 376 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 FBXW4P57775 412 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 IFT88Q13099 833 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 NTRK2Q16620 822 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 TSNAXIP1Q2TAA8 658 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 CCNYL2Q5T2Q4 361 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 HLA-DQA1Q5Y7H0 255 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 DND1Q8IYX4 353 aaKnown RBP19.81■□□□□ 0.76
USP40-215ENST00000484528 PRR22Q8IZ63 422 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 MMP21Q8N119 569 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 LRRC25Q8N386 305 aaPredicted RBP19.81■□□□□ 0.76
USP40-215ENST00000484528 MMGT1Q8N4V1 131 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 ZNF441Q8N8Z8 693 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 DCAKDQ8WVC6 231 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 DIO2Q92813 273 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 ELOVL6Q9H5J4 265 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 CNIH4Q9P003 139 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 Q9UFV3 132 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 TMCO1Q9UM00 188 aa19.81■□□□□ 0.76
USP40-215ENST00000484528 ANKHD1Q8IWZ3 2542 aaKnown RBP19.81■□□□□ 0.76
USP40-215ENST00000484528 HCN1O60741 890 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 WDR1O75083 606 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 KRT38O76015 456 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 RPS17P08708 135 aaKnown RBP19.8■□□□□ 0.76
USP40-215ENST00000484528 NT5EP21589 574 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 GDF1P27539 372 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 ECHS1P30084 290 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 GALNSP34059 522 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 XKP51811 444 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 CDH13P55290 713 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 MILR1Q7Z6M3 343 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 OR4K14Q8NGD5 310 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 ZNF597Q96LX8 424 aa19.8■□□□□ 0.76
USP40-215ENST00000484528 HBEGFQ99075 208 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms