RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 B2MP61769 119 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 UBE2IP63279 158 aaKnown RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 FOXM1Q08050 763 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF177Q13360 481 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 NFATC2Q13469 925 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 CDH18Q13634 790 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 BTG3Q14201 252 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF268Q14587 947 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 NONOQ15233 471 aaKnown RBP eCLIP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 LINC01620Q4KN68 170 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TEX44Q53QW1 395 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 RAB6CQ53S08 254 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 MLIPQ5VWP3 458 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 RAET1LQ5VY80 246 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM225Q6GV28 225 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM220Q6QAJ8 160 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GTPBP8Q8N3Z3 284 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SLC25A41Q8N5S1 370 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SLC5A8Q8N695 610 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF596Q8TC21 504 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM18Q96B42 140 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 COQ8BQ96D53 544 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 LGALS12Q96DT0 336 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 APOLD1Q96LR9 279 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TSG101Q99816 390 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 RBM24Q9BX46 236 aaKnown RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GSDMCQ9BYG8 508 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ANKRD60Q9BZ19 345 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TRIM9Q9C026 710 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 RAB6CQ9H0N0 254 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GANQ9H2C0 597 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SEMA6AQ9H2E6 1030 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 AZI2Q9H6S1 392 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 ANKRA2Q9H9E1 313 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 GKN1Q9NS71 199 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 UFSP2Q9NUQ7 469 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 FKBP14Q9NWM8 211 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 AHSPQ9NZD4 102 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 KLF2Q9Y5W3 355 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 BZW2Q9Y6E2 419 aaKnown RBP3.76□□□□□ -1.81
HMGB1-204ENST00000399489 KDM6BO15054 1643 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SHROOM2Q13796 1616 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SBNO1A3KN83 1393 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 SH3TC1Q8TE82 1336 aa3.76□□□□□ -1.81
HMGB1-204ENST00000399489 TCRBV5S1A1TA0A578 114 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SLC22A23A1A5C7 686 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LRRIQ3A6PVS8 624 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 IQCF5A8MTL0 148 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 M0R296 226 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CLDN5O00501 218 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SNX3O60493 162 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 BCAR3O75815 825 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RAF1P04049 648 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NT5EP21589 574 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 MSR1P21757 451 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 HOXA7P31268 230 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CTSCP53634 463 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SELENOVP59797 346 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RAB11AP62491 216 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 SP3Q02447 781 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 GHRHRQ02643 423 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CYLC2Q14093 348 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RAB11BQ15907 218 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC14Q49A88 953 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 PPP6R3Q5H9R7 873 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TRIM65Q6PJ69 517 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CPEB2Q7Z5Q1 589 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 FOXRED2Q8IWF2 684 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC36Q8IYA8 594 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM123Q8N131 208 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 MUC20Q8N307 709 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 COLGALT1Q8NBJ5 622 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ACVR1CQ8NER5 493 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OR2AK2Q8NG84 335 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OR4C5Q8NGB2 326 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OR52I2Q8NH67 350 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CD300LFQ8TDQ1 290 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RPL3LQ92901 407 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 MAP4K1Q92918 833 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RAB1CQ92928 201 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 TOP1MTQ969P6 601 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RITA1Q96K30 269 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC17Q96LX7 622 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 OMDQ99983 421 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ACBD6Q9BR61 282 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NUSAP1Q9BXS6 441 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 ADNPQ9H2P0 1102 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LY9Q9HBG7 655 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 NOX4Q9NPH5 578 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 PNRC2Q9NPJ4 139 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 MRPL22Q9NWU5 206 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 B3GAT1Q9P2W7 334 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 STX18Q9P2W9 335 aaKnown RBP3.75□□□□□ -1.81
HMGB1-204ENST00000399489 LRWD1Q9UFC0 647 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 RHBDD3Q9Y3P4 386 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CUX1P39880 1505 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 CARMIL1Q5VZK9 1371 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 A0A1W2PP11 408 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 A0A1W2PPC1 479 aa3.75□□□□□ -1.81
HMGB1-204ENST00000399489 C12orf71A8MTZ7 269 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms