RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 P04436 131 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CD97P48960 835 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RPS15P62841 145 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 LRFN4Q6PJG9 635 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PM20D2Q8IYS1 436 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ZBTB8BQ8NAP8 495 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 GALNT6Q8NCL4 622 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TGM7Q96PF1 710 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TAS2R8Q9NYW2 309 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 REV1Q9UBZ9 1251 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF487B1APH4 448 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 FAM227AF5H4B4 570 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ADRB3P13945 408 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SLC9A3P48764 834 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SLC11A1P49279 550 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF280AP59817 542 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RPP30P78346 268 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PPP1R8Q12972 351 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PPA1Q15181 289 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM107Q6UX40 140 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 OR52P1PQ8NH57 321 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 GCDHQ92947 438 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SECISBP2Q96T21 854 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 MTG2Q9H4K7 406 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 MAGIXQ9H6Y5 334 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CREBL2O60519 120 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 LEFTY1O75610 366 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CNOT4O95628 575 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CELP19835 753 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ALDH3B2P48448 385 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PLGLAQ15195 96 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 CCDC58Q4VC31 144 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RABL3Q5HYI8 236 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 LY6G5CQ5SRR4 150 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ISOC1Q96CN7 298 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ZFP57Q9NU63 452 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 B4GALT6Q9UBX8 382 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 PEX10O60683 326 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 IL7P13232 177 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 DRD2P14416 443 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ELK4P28324 431 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 KIAA0319Q5VV43 1072 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 GLYATL1Q969I3 302 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 FBXL18Q96ME1 805 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SYN1P17600 705 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RAB5BP61020 215 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 UGT3A2Q3SY77 523 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 NANOGP8Q6NSW7 305 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 TRIM46Q7Z4K8 759 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 MSLNLQ96KJ4 702 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 ADAMTS10Q9H324 1103 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 NANOGQ9H9S0 305 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 SPATA6Q9NWH7 488 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 GPRC5BQ9NZH0 403 aa12.25□□□□□ -0.45
CCDC88C-204ENST00000389857 RFPL1O75677 317 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 CPNE6O95741 557 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MT-CO2P00403 227 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 HBQ1P09105 142 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 LSSP48449 732 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MEF2AQ02078 507 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 OR9I1Q8NGQ6 314 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 SYT3Q9BQG1 590 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 SFXN1Q9H9B4 322 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 KLHL13Q9P2N7 655 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 NCDNQ9UBB6 729 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 IGKV6D-41A0A0C4DH26 115 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 GXYLT2A0PJZ3 443 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 F7P08709 466 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 C7P10643 843 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 NAA10P41227 235 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 CCDC28AQ8IWP9 274 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 CHCHD4Q8N4Q1 142 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 TRIB2Q92519 343 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 FKBP10Q96AY3 582 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 NELL2Q99435 816 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 SMG9Q9H0W8 520 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 PRDM4Q9UKN5 801 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MRC1P22897 1456 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 RNGTTO60942 597 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MSL3P1P0C860 447 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 HNF1BP35680 557 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 AGTR2P50052 363 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 ART1P52961 327 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 OR4C11Q6IEV9 310 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 KBTBD6Q86V97 674 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 CSNK1A1LQ8N752 337 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 PEX13Q92968 403 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 RRNAD1Q96FB5 475 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 HOXD1Q9GZZ0 328 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MAN2C1Q9NTJ4 1040 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 J3QRK9 145 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 PCDH17O14917 1159 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MPPED1O15442 326 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MAP2K3P46734 347 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 RAB31Q13636 194 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 ATAD3CQ5T2N8 411 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 OR5H2Q8NGV7 314 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 GLYATL2Q8WU03 294 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 FBXL8Q96CD0 374 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MYO10Q9HD67 2058 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms