RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RCAN2Q14206 197 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 TOMM20Q15388 145 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 SF3B4Q15427 424 aaKnown RBP eCLIP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 C18orf21Q32NC0 220 aaPredicted RBP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ADPRMQ3LIE5 342 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 BBS9Q3SYG4 887 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 PRAMEF9Q5VWM5 478 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 DUPD1Q68J44 220 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ABHD17CQ6PCB6 329 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 PAQR3Q6TCH7 311 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 SYT9Q86SS6 491 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 TMPRSS11BQ86T26 416 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 SLC15A4Q8N697 577 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 GABPB2Q8TAK5 448 aaPredicted RBP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 RAB3IL1Q8TBN0 382 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 SPPL2AQ8TCT8 520 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 C1orf54Q8WWF1 131 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 FBXL8Q96CD0 374 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ART5Q96L15 291 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ZFP3Q96NJ6 502 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 GAL3ST4Q96RP7 486 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 NDNQ99608 321 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 MAPKAP1Q9BPZ7 522 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 BEX2Q9BXY8 128 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 AMBRA1Q9C0C7 1298 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 WWTR1Q9GZV5 400 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 L2HGDHQ9H9P8 463 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 LRTM1Q9HBL6 345 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 PRDM7Q9NQW5 492 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 INTS10Q9NVR2 710 aaKnown RBP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 TEX10Q9NXF1 929 aaPredicted RBP7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 FETUBQ9UGM5 382 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 MED12LQ86YW9 2145 aa7.67□□□□□ -1.18
HMGB1P39-201ENST00000366304 ZCWPW2A0A1B0GU75 182 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 URADA6NGE7 173 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 H0Y3Z8 333 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 C16orf97H3BN30 126 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PLOD2O00469 737 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PRKRAO75569 313 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 GUCA1CO95843 209 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ACTL6AO96019 429 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 C8GP07360 202 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 DANCRP0C864 163 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 POU2F1P14859 743 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PTMSP20962 102 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 THBS2P35442 1172 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PTGDSP41222 190 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 MSH2P43246 934 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 LHX2P50458 406 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 DIO3P55073 304 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 GFRA1P56159 465 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 CLDN18P56856 261 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 RPS4XP62701 263 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 OCRLQ01968 901 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 FUT7Q11130 342 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 STX4Q12846 297 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 EBPQ15125 230 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 TMEM249Q2WGJ8 235 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 UBAP2Q5T6F2 1119 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 TIGD3Q6B0B8 471 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ATG4DQ86TL0 474 aaPredicted RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 THOC6Q86W42 341 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 TRIM42Q8IWZ5 723 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 AGGF1Q8N302 714 aaeCLIP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 CNEP1R1Q8N9A8 125 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ZNF610Q8N9Z0 462 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 AKAP1Q92667 903 aaKnown RBP eCLIP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 LINGO1Q96FE5 620 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PGM2Q96G03 612 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 FAR2Q96K12 515 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 SERINC2Q96SA4 455 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ADAM19Q9H013 955 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ESRP2Q9H6T0 727 aaKnown RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 PELI2Q9HAT8 420 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 ARL15Q9NXU5 204 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 COPS7AQ9UBW8 275 aa7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 MAGED1Q9Y5V3 778 aaPredicted RBP7.66□□□□□ -1.18
HMGB1P39-201ENST00000366304 A0A1W2PS29 197 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 CTAGE9A4FU28 777 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 GOLGA6L9A6NEM1 432 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 C17orf51A8MQB3 221 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 H0YC42 278 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 GOLGA6L22H0YM25 854 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 RTCAO00442 366 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 HCRTR2O43614 444 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 CD8AP01732 235 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 PAMP19021 973 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 IGFBP5P24593 272 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 GABRB3P28472 473 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SERPINB3P29508 390 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 STIP1P31948 543 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 IDUAP35475 653 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 STT3AP46977 705 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SLC6A12P48065 614 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 TPD52P55327 224 aaPredicted RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 CLDN15P56746 228 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 SLC37A1P57057 533 aa7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 STXBP1P61764 594 aaKnown RBP7.65□□□□□ -1.18
HMGB1P39-201ENST00000366304 HERVK_113P63132 956 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms