RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 FRZBQ92765 325 aa4.66□□□□□ -1.66
CSMD3-201ENST00000297405 ACDQ96AP0 544 aa4.66□□□□□ -1.66
CSMD3-201ENST00000297405 TSSK2Q96PF2 358 aa4.66□□□□□ -1.66
CSMD3-201ENST00000297405 CSPG4P5Q96PW8 444 aa4.66□□□□□ -1.66
CSMD3-201ENST00000297405 UBQLN3Q9H347 655 aa4.66□□□□□ -1.66
CSMD3-201ENST00000297405 CACNA1AO00555 2505 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RREB1Q92766 1687 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TRAV6A0A075B6T7 132 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 A0A1W2PQL4 384 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 AP1G1O43747 822 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MED6O75586 246 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ERAL1O75616 437 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 OR2C1O95371 312 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TSSK4Q6SA08 328 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SV2AQ7L0J3 742 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 PYROXD2Q8N2H3 581 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SCARB1Q8WTV0 552 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RPL3LQ92901 407 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 GLYATL1Q969I3 302 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SLC22A18Q96BI1 424 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MSI2Q96DH6 328 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RNF170Q96K19 258 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MVB12BQ9H7P6 319 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TSPAN11A1L157 253 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 GABRDO14764 452 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RFC2P35250 354 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SCNN1AP37088 669 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 BCL2L1Q07817 233 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF154Q13106 437 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MSMO1Q15800 293 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 INTS5Q6P9B9 1019 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 IL34Q6ZMJ4 242 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ASRGL1Q7L266 308 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 GALNT5Q7Z7M9 940 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RHEBL1Q8TAI7 183 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 DPCDQ9BVM2 203 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 PDGFDQ9GZP0 370 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ASF1BQ9NVP2 202 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TAS2R16Q9NYV7 291 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MROH6A6NGR9 719 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 DDCP20711 480 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 C5AR1P21730 350 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ETV4P43268 484 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SIM2Q14190 667 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RNF151Q2KHN1 245 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 KIAA0930Q6ICG6 404 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF585AQ6P3V2 769 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 LGI4Q8N135 537 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 OR2D3Q8NGH3 330 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZDHHC1Q8WTX9 485 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SPANXDQ9BXN6 97 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 DERAQ9Y315 318 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 CACNG2Q9Y698 323 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 KNDC1Q76NI1 1749 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ABHD14A-ACY1A0A1B0GW23 586 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZBTB7AO95365 584 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TRUB2O95900 331 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 EPOP01588 193 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 HTR1BP28222 390 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RHOAP61586 193 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 CSNK2A1P68400 391 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RAB40BQ12829 278 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SNTB1Q13884 538 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ADIRFQ15847 76 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZCCHC23Q6ZST2 131 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 KIAA0907Q7Z7F0 614 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 C14orf80Q86SX3 495 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF101Q8IZC7 436 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 CSNK2A3Q8NEV1 391 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 EFCAB11Q9BUY7 163 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MKKSQ9NPJ1 570 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TXNL4BQ9NX01 149 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SMPD4Q9NXE4 827 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 GMEB2Q9UKD1 530 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ATRNO75882 1429 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 A0A096LPI6 279 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RPS10-NUDT3A0A1W2PQS6 291 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 J3QRK9 145 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TP53I11O14683 189 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 FFAR3O14843 346 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 B4GAT1O43505 415 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 AKAIN1P0CW23 69 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 CCKARP32238 428 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RPS10P46783 165 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TROAPQ12815 778 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 TAF9Q16594 264 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 RAP1GAP2Q684P5 730 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 SHFQ7M4L6 423 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 DCPSQ96C86 337 aaKnown RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 FBXL8Q96CD0 374 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ATP5SQ99766 215 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 CDT1Q9H211 546 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 MS4A12Q9NXJ0 267 aa4.65□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF490Q9ULM2 529 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-201ENST00000297405 FANCGO15287 622 aa4.65□□□□□ -1.67
CSMD3-201ENST00000297405 LRATO95237 230 aa4.65□□□□□ -1.67
CSMD3-201ENST00000297405 CST2P09228 141 aa4.65□□□□□ -1.67
CSMD3-201ENST00000297405 ACOT2P49753 483 aa4.65□□□□□ -1.67
CSMD3-201ENST00000297405 EMX2Q04743 252 aa4.65□□□□□ -1.67
CSMD3-201ENST00000297405 NPRL3Q12980 569 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms