RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZNF84P51523 738 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 PPP3R1P63098 170 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 CARM1Q86X55 608 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 CCDC116Q8IYX3 515 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 VWA5B2Q8N398 1253 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 IL17RCQ8NAC3 791 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 PSD4Q8NDX1 1056 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 FER1L6-AS2Q96M78 137 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 RERGLQ9H628 205 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 TIMMDC1Q9NPL8 285 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 ADAMTS6Q9UKP5 1117 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 CCDC163A0A0D9SF12 145 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 A0A0G2JN53 185 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 TRAPPC13A5PLN9 417 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 A6NIZ1 184 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 SLC9B1P1A6NJY1 282 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 FLRT2O43155 660 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 ZFAND5O76080 213 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 GABARAPL2P60520 117 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 RAP1BP61224 184 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 RAP1AP62834 184 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.96□□□□□ -0.34
LDLR-201ENST00000252444 LMNTD1Q8N9Z9 388 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 SMRP1Q8NCR6 262 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 MZB1Q8WU39 189 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 TMBIM1Q969X1 311 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 FAM129BQ96TA1 746 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 UNC119BA6NIH7 251 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 NCK1P16333 377 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SDC1P18827 310 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 DSG2Q14126 1118 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SEC23BQ15437 767 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 TMEM64Q6YI46 380 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 TBC1D20Q96BZ9 403 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 DGCR14Q96DF8 476 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 ACPTQ9BZG2 426 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 H0YIG0 161 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 JRKO75564 520 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 CPMP14384 443 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 MRPL49Q13405 166 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 RGNQ15493 299 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 TRIM16LQ309B1 348 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 RUNDC3AQ59EK9 446 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ABHD17BQ5VST6 288 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ABHD12BQ7Z5M8 362 aaPredicted RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 CRB3Q9BUF7 120 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 UCK1Q9HA47 277 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 PCDHGB6Q9Y5F9 930 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 MTCH2Q9Y6C9 303 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SH3D21A4FU49 640 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 VSTM2BA6NLU5 285 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 LSM1O15116 133 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 ASNA1O43681 348 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 RASAL1O95294 804 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 DCDP81605 110 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 TAP2Q03519 686 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 NSDHLQ15738 373 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SLC30A6Q6NXT4 461 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 RBM44Q6ZP01 1051 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 LAS2Q8IYD9 372 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SLC34A3Q8N130 599 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ESX1Q8N693 406 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 OR5AK3PQ8NH89 298 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SGTBQ96EQ0 304 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SGPP1Q9BX95 441 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ITGA10O75578 1167 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 SMNDC1O75940 238 aaKnown RBP eCLIP12.95□□□□□ -0.34
LDLR-201ENST00000252444 FARS2O95363 451 aaKnown RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 CPNE6O95741 557 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 PEX11BO96011 259 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 PLGP00747 810 aaPredicted RBP12.95□□□□□ -0.34
LDLR-201ENST00000252444 LHCGRP22888 699 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 PDX1P52945 283 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 CBFBQ13951 182 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ZNF846Q147U1 533 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 TPRG1LQ5T0D9 272 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 FAM205BPQ63HN1 556 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 PACS2Q86VP3 889 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 LSMEM2Q8N112 164 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 ALOXE3Q9BYJ1 711 aa12.95□□□□□ -0.34
LDLR-201ENST00000252444 FEZF1A0PJY2 475 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 TOX3O15405 576 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 OR2T1O43869 369 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 OR12D1P0DN82 309 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 SLC6A12P48065 614 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 HSD17B7P56937 341 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 AP3S2P59780 193 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 PRPS1P60891 318 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 PON3Q15166 354 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 SMAD2Q15796 467 aaKnown RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 MAMDC2Q7Z304 686 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 APIPQ96GX9 242 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 JSRP1Q96MG2 331 aaPredicted RBP12.94□□□□□ -0.34
LDLR-201ENST00000252444 FCRL4Q96PJ5 515 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 OR1F2PQ96R84 312 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 ARHGAP9Q9BRR9 750 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 ANKRD19PQ9H560 264 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 EURLQ9NYK6 297 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 PACSIN3Q9UKS6 424 aa12.94□□□□□ -0.34
LDLR-201ENST00000252444 FBXO4Q9UKT5 387 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms