RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 CACNA1SQ13698 1873 aa23.26■■□□□ 1.31
PNKP-230ENST00000638016 SENP3-EIF4A1A0A087X0R7 540 aa23.26■■□□□ 1.31
PNKP-230ENST00000638016 ZNF316A6NFI3 1004 aaPredicted RBP23.26■■□□□ 1.31
PNKP-230ENST00000638016 ANXA1P04083 346 aa23.26■■□□□ 1.31
PNKP-230ENST00000638016 NIP7Q9Y221 180 aaKnown RBP eCLIP23.26■■□□□ 1.31
PNKP-230ENST00000638016 NUP98P52948 1817 aa23.26■■□□□ 1.31
PNKP-230ENST00000638016 H0YIN7 160 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 EIF2S2P20042 333 aaKnown RBP23.25■■□□□ 1.31
PNKP-230ENST00000638016 RASSF7Q02833 373 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 PROSER3Q2NL68 480 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 CLEC4GQ6UXB4 293 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 NECTIN2Q92692 538 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 BRIP1Q9BX63 1249 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 SBF1O95248 1867 aa23.25■■□□□ 1.31
PNKP-230ENST00000638016 APAF1O14727 1248 aa23.24■■□□□ 1.31
PNKP-230ENST00000638016 NPHP1O15259 732 aa23.24■■□□□ 1.31
PNKP-230ENST00000638016 GPBP1L1Q9HC44 474 aaPredicted RBP23.24■■□□□ 1.31
PNKP-230ENST00000638016 ZNF652Q9Y2D9 606 aa23.24■■□□□ 1.31
PNKP-230ENST00000638016 C1QTNF8P60827 252 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 PDIA6Q15084 440 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 C9orf131Q5VYM1 1079 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 LRP10Q7Z4F1 713 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 NBPF5PQ86XG9 351 aaPredicted RBP23.23■■□□□ 1.31
PNKP-230ENST00000638016 TTLL6Q8N841 843 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 ZNF622Q969S3 477 aaKnown RBP eCLIP23.23■■□□□ 1.31
PNKP-230ENST00000638016 ZBTB3Q9H5J0 574 aa23.23■■□□□ 1.31
PNKP-230ENST00000638016 CHL1O00533 1208 aa23.22■■□□□ 1.31
PNKP-230ENST00000638016 PRELPP51888 382 aa23.22■■□□□ 1.31
PNKP-230ENST00000638016 ZNF219Q9P2Y4 722 aaPredicted RBP23.22■■□□□ 1.31
PNKP-230ENST00000638016 MAP3K15Q6ZN16 1313 aa23.22■■□□□ 1.31
PNKP-230ENST00000638016 PDE6BP35913 854 aa23.21■■□□□ 1.31
PNKP-230ENST00000638016 ST5P78524 1137 aa23.21■■□□□ 1.31
PNKP-230ENST00000638016 TNRC6CQ9HCJ0 1690 aaKnown RBP23.21■■□□□ 1.31
PNKP-230ENST00000638016 SLX4Q8IY92 1834 aa23.21■■□□□ 1.31
PNKP-230ENST00000638016 GPTP24298 496 aa23.2■■□□□ 1.3
PNKP-230ENST00000638016 BABAM1Q9NWV8 329 aa23.2■■□□□ 1.3
PNKP-230ENST00000638016 ABCC12Q96J65 1359 aa23.19■■□□□ 1.3
PNKP-230ENST00000638016 KIF6Q6ZMV9 814 aa23.19■■□□□ 1.3
PNKP-230ENST00000638016 RNF181Q9P0P0 153 aa23.19■■□□□ 1.3
PNKP-230ENST00000638016 CCDC88AQ3V6T2 1871 aa23.18■■□□□ 1.3
PNKP-230ENST00000638016 ERBB4Q15303 1308 aa23.18■■□□□ 1.3
PNKP-230ENST00000638016 UBN2Q6ZU65 1347 aa23.18■■□□□ 1.3
PNKP-230ENST00000638016 ERVV-1B6SEH8 477 aa23.17■■□□□ 1.3
PNKP-230ENST00000638016 NFKBIEO00221 500 aa23.17■■□□□ 1.3
PNKP-230ENST00000638016 SRGNP10124 158 aa23.17■■□□□ 1.3
PNKP-230ENST00000638016 NUTM1Q86Y26 1132 aa23.17■■□□□ 1.3
PNKP-230ENST00000638016 RGL2O15211 777 aa23.16■■□□□ 1.3
PNKP-230ENST00000638016 C21orf2O43822 256 aa23.16■■□□□ 1.3
PNKP-230ENST00000638016 MBIPQ9NS73 344 aa23.16■■□□□ 1.3
PNKP-230ENST00000638016 ARFGEF2Q9Y6D5 1785 aa23.16■■□□□ 1.3
PNKP-230ENST00000638016 KIF3CO14782 793 aa23.15■■□□□ 1.3
PNKP-230ENST00000638016 TPTE2Q6XPS3 522 aa23.15■■□□□ 1.3
PNKP-230ENST00000638016 FER1L6Q2WGJ9 1857 aa23.14■■□□□ 1.29
PNKP-230ENST00000638016 PRPF40BQ6NWY9 871 aaKnown RBP23.14■■□□□ 1.29
PNKP-230ENST00000638016 CFAP44Q96MT7 982 aa23.14■■□□□ 1.29
PNKP-230ENST00000638016 NMRK2Q9NPI5 230 aa23.14■■□□□ 1.29
PNKP-230ENST00000638016 AIMP1Q12904 312 aaKnown RBP23.13■■□□□ 1.29
PNKP-230ENST00000638016 ERFEQ4G0M1 354 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 SUSD4Q5VX71 490 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 STYK1Q6J9G0 422 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 XAGE3Q8WTP9 111 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 MASTLQ96GX5 879 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 CHPF2Q9P2E5 772 aa23.13■■□□□ 1.29
PNKP-230ENST00000638016 ZNF853P0CG23 659 aa23.12■■□□□ 1.29
PNKP-230ENST00000638016 GIGYF2Q6Y7W6 1299 aaKnown RBP23.12■■□□□ 1.29
PNKP-230ENST00000638016 COPS6Q7L5N1 327 aa23.12■■□□□ 1.29
PNKP-230ENST00000638016 TIAM2Q8IVF5 1701 aa23.12■■□□□ 1.29
PNKP-230ENST00000638016 PDZRN3Q9UPQ7 1066 aa23.12■■□□□ 1.29
PNKP-230ENST00000638016 GTF2E1P29083 439 aaPredicted RBP23.11■■□□□ 1.29
PNKP-230ENST00000638016 OLFM4Q6UX06 510 aa23.11■■□□□ 1.29
PNKP-230ENST00000638016 ZNF34Q8IZ26 560 aa23.11■■□□□ 1.29
PNKP-230ENST00000638016 ZNF428Q96B54 188 aa23.11■■□□□ 1.29
PNKP-230ENST00000638016 MRS2Q9HD23 443 aa23.11■■□□□ 1.29
PNKP-230ENST00000638016 ANKRD36CQ5JPF3 1778 aa23.1■■□□□ 1.29
PNKP-230ENST00000638016 KLRG2A4D1S0 409 aaPredicted RBP23.1■■□□□ 1.29
PNKP-230ENST00000638016 ANP32CO43423 234 aa23.1■■□□□ 1.29
PNKP-230ENST00000638016 HDGFL1Q5TGJ6 251 aa23.1■■□□□ 1.29
PNKP-230ENST00000638016 DUSP27Q5VZP5 1158 aa23.1■■□□□ 1.29
PNKP-230ENST00000638016 CNKSR1Q969H4 720 aa23.1■■□□□ 1.29
PNKP-230ENST00000638016 NTSR2O95665 410 aa23.09■■□□□ 1.29
PNKP-230ENST00000638016 SLC51AQ86UW1 340 aa23.09■■□□□ 1.29
PNKP-230ENST00000638016 DDX21Q9NR30 783 aaKnown RBP eCLIP23.09■■□□□ 1.29
PNKP-230ENST00000638016 ELL2O00472 640 aaPredicted RBP23.08■■□□□ 1.29
PNKP-230ENST00000638016 NPR1P16066 1061 aa23.08■■□□□ 1.29
PNKP-230ENST00000638016 LMNB1P20700 586 aa23.08■■□□□ 1.29
PNKP-230ENST00000638016 C3orf67Q6ZVT6 689 aa23.08■■□□□ 1.29
PNKP-230ENST00000638016 IFT57Q9NWB7 429 aa23.08■■□□□ 1.29
PNKP-230ENST00000638016 C7orf43Q8WVR3 580 aa23.07■■□□□ 1.28
PNKP-230ENST00000638016 NYXQ9GZU5 481 aa23.07■■□□□ 1.28
PNKP-230ENST00000638016 IBTKQ9P2D0 1353 aaPredicted RBP23.06■■□□□ 1.28
PNKP-230ENST00000638016 DICER1Q9UPY3 1922 aaKnown RBP23.05■■□□□ 1.28
PNKP-230ENST00000638016 HOXB7P09629 217 aa23.04■■□□□ 1.28
PNKP-230ENST00000638016 GNAI1P63096 354 aa23.04■■□□□ 1.28
PNKP-230ENST00000638016 CRY2Q49AN0 593 aa23.04■■□□□ 1.28
PNKP-230ENST00000638016 SYNE4Q8N205 404 aa23.04■■□□□ 1.28
PNKP-230ENST00000638016 C8orf58Q8NAV2 365 aa23.04■■□□□ 1.28
PNKP-230ENST00000638016 TSR2Q969E8 191 aaKnown RBP23.04■■□□□ 1.28
PNKP-230ENST00000638016 TAOK3Q9H2K8 898 aa23.03■■□□□ 1.28
PNKP-230ENST00000638016 LAMB2P55268 1798 aa23.02■■□□□ 1.28
PNKP-230ENST00000638016 RIC1Q4ADV7 1423 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms