RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 PRR5LQ6MZQ0 368 aa18.03■□□□□ 0.48
PNKP-228ENST00000637325 KIF6Q6ZMV9 814 aa18.03■□□□□ 0.48
PNKP-228ENST00000637325 CCDC24Q8N4L8 307 aa18.03■□□□□ 0.48
PNKP-228ENST00000637325 CACNA1SQ13698 1873 aa18.03■□□□□ 0.48
PNKP-228ENST00000637325 PDE6BP35913 854 aa18.02■□□□□ 0.48
PNKP-228ENST00000637325 NBPF5PQ86XG9 351 aaPredicted RBP18.02■□□□□ 0.48
PNKP-228ENST00000637325 BRIP1Q9BX63 1249 aa18.02■□□□□ 0.48
PNKP-228ENST00000637325 PDZRN3Q9UPQ7 1066 aa18.02■□□□□ 0.48
PNKP-228ENST00000637325 NIP7Q9Y221 180 aaKnown RBP eCLIP18.02■□□□□ 0.48
PNKP-228ENST00000637325 ERBB4Q15303 1308 aa18.01■□□□□ 0.47
PNKP-228ENST00000637325 CCDC88AQ3V6T2 1871 aa18.01■□□□□ 0.47
PNKP-228ENST00000637325 CHL1O00533 1208 aa18.01■□□□□ 0.47
PNKP-228ENST00000637325 RGL2O15211 777 aa18.01■□□□□ 0.47
PNKP-228ENST00000637325 ZNF622Q969S3 477 aaKnown RBP eCLIP18.01■□□□□ 0.47
PNKP-228ENST00000637325 SBF1O95248 1867 aa18.01■□□□□ 0.47
PNKP-228ENST00000637325 ATP10DQ9P241 1426 aa18■□□□□ 0.47
PNKP-228ENST00000637325 HLFQ16534 295 aa18■□□□□ 0.47
PNKP-228ENST00000637325 CCDC184Q52MB2 194 aa18■□□□□ 0.47
PNKP-228ENST00000637325 TTLL6Q8N841 843 aa18■□□□□ 0.47
PNKP-228ENST00000637325 MAP3K15Q6ZN16 1313 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 FAM177BA6PVY3 158 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 ERVV-1B6SEH8 477 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 CALD1Q05682 793 aaKnown RBP17.99■□□□□ 0.47
PNKP-228ENST00000637325 TPTE2Q6XPS3 522 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 TTLL7Q6ZT98 887 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 NECTIN2Q92692 538 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 MRS2Q9HD23 443 aa17.99■□□□□ 0.47
PNKP-228ENST00000637325 GTF2E1P29083 439 aaPredicted RBP17.98■□□□□ 0.47
PNKP-228ENST00000637325 ZNF526Q8TF50 670 aaPredicted RBP17.98■□□□□ 0.47
PNKP-228ENST00000637325 CFAP44Q96MT7 982 aa17.98■□□□□ 0.47
PNKP-228ENST00000637325 COL11A2P13942 1736 aaPredicted RBP17.98■□□□□ 0.47
PNKP-228ENST00000637325 ZBTB3Q9H5J0 574 aa17.97■□□□□ 0.47
PNKP-228ENST00000637325 ADCY9O60503 1353 aa17.96■□□□□ 0.47
PNKP-228ENST00000637325 KRT24Q2M2I5 525 aa17.96■□□□□ 0.47
PNKP-228ENST00000637325 GPBP1L1Q9HC44 474 aaPredicted RBP17.96■□□□□ 0.47
PNKP-228ENST00000637325 ANXA1P04083 346 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 GNAI1P63096 354 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 PDIA6Q15084 440 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 C9orf131Q5VYM1 1079 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 NYXQ9GZU5 481 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 SLX4Q8IY92 1834 aa17.95■□□□□ 0.46
PNKP-228ENST00000637325 GPTP24298 496 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 PROSER3Q2NL68 480 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 CNKSR1Q969H4 720 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 MASTLQ96GX5 879 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 MBIPQ9NS73 344 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 IFT57Q9NWB7 429 aa17.94■□□□□ 0.46
PNKP-228ENST00000637325 HOXB7P09629 217 aa17.93■□□□□ 0.46
PNKP-228ENST00000637325 AIMP1Q12904 312 aaKnown RBP17.93■□□□□ 0.46
PNKP-228ENST00000637325 HDGFL1Q5TGJ6 251 aa17.93■□□□□ 0.46
PNKP-228ENST00000637325 STYK1Q6J9G0 422 aa17.93■□□□□ 0.46
PNKP-228ENST00000637325 GIGYF2Q6Y7W6 1299 aaKnown RBP17.93■□□□□ 0.46
PNKP-228ENST00000637325 DDX21Q9NR30 783 aaKnown RBP eCLIP17.93■□□□□ 0.46
PNKP-228ENST00000637325 ZNF219Q9P2Y4 722 aaPredicted RBP17.93■□□□□ 0.46
PNKP-228ENST00000637325 ARFGEF2Q9Y6D5 1785 aa17.93■□□□□ 0.46
PNKP-228ENST00000637325 ANKRD36CQ5JPF3 1778 aa17.92■□□□□ 0.46
PNKP-228ENST00000637325 SRGNP10124 158 aa17.92■□□□□ 0.46
PNKP-228ENST00000637325 DUSP27Q5VZP5 1158 aa17.92■□□□□ 0.46
PNKP-228ENST00000637325 COPS6Q7L5N1 327 aa17.92■□□□□ 0.46
PNKP-228ENST00000637325 RNF181Q9P0P0 153 aa17.92■□□□□ 0.46
PNKP-228ENST00000637325 SENP3-EIF4A1A0A087X0R7 540 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 C21orf2O43822 256 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 ZNF853P0CG23 659 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 LRP10Q7Z4F1 713 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 XAGE3Q8WTP9 111 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 CHPF2Q9P2E5 772 aa17.91■□□□□ 0.46
PNKP-228ENST00000637325 FER1L6Q2WGJ9 1857 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 NPR1P16066 1061 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 C1QTNF8P60827 252 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 RASSF7Q02833 373 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 PPP1R42Q7Z4L9 355 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 NUTM1Q86Y26 1132 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 ZNF34Q8IZ26 560 aa17.9■□□□□ 0.46
PNKP-228ENST00000637325 DICER1Q9UPY3 1922 aaKnown RBP17.9■□□□□ 0.46
PNKP-228ENST00000637325 PARP10Q53GL7 1025 aa17.89■□□□□ 0.45
PNKP-228ENST00000637325 HSP90AB3PQ58FF7 597 aa17.89■□□□□ 0.45
PNKP-228ENST00000637325 SUSD4Q5VX71 490 aa17.89■□□□□ 0.45
PNKP-228ENST00000637325 DBF4Q9UBU7 674 aaPredicted RBP17.89■□□□□ 0.45
PNKP-228ENST00000637325 ELL2O00472 640 aaPredicted RBP17.88■□□□□ 0.45
PNKP-228ENST00000637325 LMNB1P20700 586 aa17.88■□□□□ 0.45
PNKP-228ENST00000637325 ERFEQ4G0M1 354 aa17.88■□□□□ 0.45
PNKP-228ENST00000637325 PRPF40BQ6NWY9 871 aaKnown RBP17.88■□□□□ 0.45
PNKP-228ENST00000637325 UBN2Q6ZU65 1347 aa17.88■□□□□ 0.45
PNKP-228ENST00000637325 KLRG2A4D1S0 409 aaPredicted RBP17.87■□□□□ 0.45
PNKP-228ENST00000637325 CCDC27Q2M243 656 aa17.87■□□□□ 0.45
PNKP-228ENST00000637325 SOGA3Q5TF21 947 aa17.87■□□□□ 0.45
PNKP-228ENST00000637325 HYPKQ9NX55 129 aa17.87■□□□□ 0.45
PNKP-228ENST00000637325 IBTKQ9P2D0 1353 aaPredicted RBP17.87■□□□□ 0.45
PNKP-228ENST00000637325 TNRC6CQ9HCJ0 1690 aaKnown RBP17.87■□□□□ 0.45
PNKP-228ENST00000637325 ALDH1B1P30837 517 aa17.86■□□□□ 0.45
PNKP-228ENST00000637325 WWC1Q8IX03 1113 aa17.86■□□□□ 0.45
PNKP-228ENST00000637325 UTP14AQ9BVJ6 771 aaKnown RBP17.86■□□□□ 0.45
PNKP-228ENST00000637325 SALL2Q9Y467 1007 aaPredicted RBP17.86■□□□□ 0.45
PNKP-228ENST00000637325 ABCC12Q96J65 1359 aa17.86■□□□□ 0.45
PNKP-228ENST00000637325 NTSR2O95665 410 aa17.85■□□□□ 0.45
PNKP-228ENST00000637325 TCIRG1Q13488 830 aa17.85■□□□□ 0.45
PNKP-228ENST00000637325 FAM9BQ8IZU0 186 aa17.85■□□□□ 0.45
PNKP-228ENST00000637325 RPGRQ92834 1020 aaKnown RBP17.85■□□□□ 0.45
PNKP-228ENST00000637325 CHMP4AQ9BY43 222 aa17.85■□□□□ 0.45
PNKP-228ENST00000637325 TIAM2Q8IVF5 1701 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms