RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C8orf58Q8NAV2 365 aa26.78■■□□□ 1.88
CLN3-240ENST00000631023 DBF4Q9UBU7 674 aaPredicted RBP26.78■■□□□ 1.88
CLN3-240ENST00000631023 MAP3K15Q6ZN16 1313 aa26.77■■□□□ 1.88
CLN3-240ENST00000631023 C10orf71Q711Q0 1435 aa26.77■■□□□ 1.88
CLN3-240ENST00000631023 NRXN2Q9P2S2 1712 aa26.77■■□□□ 1.88
CLN3-240ENST00000631023 TGFB2P61812 414 aa26.76■■□□□ 1.87
CLN3-240ENST00000631023 PROSER3Q2NL68 480 aa26.76■■□□□ 1.87
CLN3-240ENST00000631023 TTLL7Q6ZT98 887 aa26.76■■□□□ 1.87
CLN3-240ENST00000631023 CHPF2Q9P2E5 772 aa26.76■■□□□ 1.87
CLN3-240ENST00000631023 CARMIL3Q8ND23 1372 aa26.76■■□□□ 1.87
CLN3-240ENST00000631023 ANXA1P04083 346 aa26.75■■□□□ 1.87
CLN3-240ENST00000631023 LRP10Q7Z4F1 713 aa26.75■■□□□ 1.87
CLN3-240ENST00000631023 MYH16Q9H6N6 1097 aa26.75■■□□□ 1.87
CLN3-240ENST00000631023 GOLGA2Q08379 1002 aa26.75■■□□□ 1.87
CLN3-240ENST00000631023 N4BP2Q86UW6 1770 aaPredicted RBP26.74■■□□□ 1.87
CLN3-240ENST00000631023 HLFQ16534 295 aa26.74■■□□□ 1.87
CLN3-240ENST00000631023 HYPKQ9NX55 129 aa26.74■■□□□ 1.87
CLN3-240ENST00000631023 CACNA1FO60840 1977 aa26.74■■□□□ 1.87
CLN3-240ENST00000631023 FANCIQ9NVI1 1328 aa26.73■■□□□ 1.87
CLN3-240ENST00000631023 GPR162Q16538 588 aa26.73■■□□□ 1.87
CLN3-240ENST00000631023 CCDC30Q5VVM6 783 aa26.73■■□□□ 1.87
CLN3-240ENST00000631023 COPS6Q7L5N1 327 aa26.73■■□□□ 1.87
CLN3-240ENST00000631023 NPHP1O15259 732 aa26.72■■□□□ 1.87
CLN3-240ENST00000631023 ZBTB3Q9H5J0 574 aa26.72■■□□□ 1.87
CLN3-240ENST00000631023 NIP7Q9Y221 180 aaKnown RBP eCLIP26.72■■□□□ 1.87
CLN3-240ENST00000631023 AIMP1Q12904 312 aaKnown RBP26.71■■□□□ 1.87
CLN3-240ENST00000631023 TWISTNBQ3B726 338 aaPredicted RBP26.71■■□□□ 1.87
CLN3-240ENST00000631023 PELP1Q8IZL8 1130 aaKnown RBP26.71■■□□□ 1.87
CLN3-240ENST00000631023 TSPYL6Q8N831 410 aa26.71■■□□□ 1.87
CLN3-240ENST00000631023 XAGE3Q8WTP9 111 aa26.71■■□□□ 1.87
CLN3-240ENST00000631023 ZNF521Q96K83 1311 aa26.71■■□□□ 1.87
CLN3-240ENST00000631023 KIAA1551Q9HCM1 1747 aa26.69■■□□□ 1.86
CLN3-240ENST00000631023 GIGYF2Q6Y7W6 1299 aaKnown RBP26.69■■□□□ 1.86
CLN3-240ENST00000631023 NBPF5PQ86XG9 351 aaPredicted RBP26.69■■□□□ 1.86
CLN3-240ENST00000631023 CNBD1Q8NA66 436 aa26.69■■□□□ 1.86
CLN3-240ENST00000631023 A0A0G2JLW4 131 aa26.68■■□□□ 1.86
CLN3-240ENST00000631023 SPINK5Q9NQ38 1064 aaPredicted RBP26.68■■□□□ 1.86
CLN3-240ENST00000631023 PXDNLA1KZ92 1463 aa26.68■■□□□ 1.86
CLN3-240ENST00000631023 TPTE2Q6XPS3 522 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 GOLGB1Q14789 3259 aaKnown RBP26.67■■□□□ 1.86
CLN3-240ENST00000631023 ATP10DQ9P241 1426 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 DPEP1P16444 411 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 ST5P78524 1137 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 PRR5LQ6MZQ0 368 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 STK31Q9BXU1 1019 aa26.67■■□□□ 1.86
CLN3-240ENST00000631023 BRCA1P38398 1863 aaKnown RBP26.67■■□□□ 1.86
CLN3-240ENST00000631023 ANKRD36CQ5JPF3 1778 aa26.66■■□□□ 1.86
CLN3-240ENST00000631023 CHD4Q14839 1912 aa26.66■■□□□ 1.86
CLN3-240ENST00000631023 EXOSC9Q06265 439 aaKnown RBP26.66■■□□□ 1.86
CLN3-240ENST00000631023 HSP90AB3PQ58FF7 597 aa26.66■■□□□ 1.86
CLN3-240ENST00000631023 ANKRD13DQ6ZTN6 518 aa26.66■■□□□ 1.86
CLN3-240ENST00000631023 BRIP1Q9BX63 1249 aa26.65■■□□□ 1.86
CLN3-240ENST00000631023 ANKRD31Q8N7Z5 1873 aa26.65■■□□□ 1.86
CLN3-240ENST00000631023 PLBD2Q8NHP8 589 aa26.64■■□□□ 1.86
CLN3-240ENST00000631023 NYXQ9GZU5 481 aa26.64■■□□□ 1.86
CLN3-240ENST00000631023 E9PSI1 815 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 GRIN3BO60391 1043 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 PDE6BP35913 854 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 ZNF34Q8IZ26 560 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 PDZRN3Q9UPQ7 1066 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 FAM177BA6PVY3 158 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 GPTP24298 496 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 GTF2E1P29083 439 aaPredicted RBP26.63■■□□□ 1.85
CLN3-240ENST00000631023 PIM2Q9P1W9 311 aa26.63■■□□□ 1.85
CLN3-240ENST00000631023 PARP10Q53GL7 1025 aa26.62■■□□□ 1.85
CLN3-240ENST00000631023 H0YIN7 160 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 VAMP4O75379 141 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 YBX3P16989 372 aaKnown RBP eCLIP26.61■■□□□ 1.85
CLN3-240ENST00000631023 KCNA3P22001 575 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 CHRNA5P30532 468 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 CCDC24Q8N4L8 307 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 PHAXQ9H814 394 aaKnown RBP26.61■■□□□ 1.85
CLN3-240ENST00000631023 WWC3Q9ULE0 1092 aa26.61■■□□□ 1.85
CLN3-240ENST00000631023 DLEC1Q9Y238 1755 aa26.6■■□□□ 1.85
CLN3-240ENST00000631023 TCIRG1Q13488 830 aa26.6■■□□□ 1.85
CLN3-240ENST00000631023 PPP1R42Q7Z4L9 355 aa26.6■■□□□ 1.85
CLN3-240ENST00000631023 ARFGEF2Q9Y6D5 1785 aa26.6■■□□□ 1.85
CLN3-240ENST00000631023 DDX58O95786 925 aaKnown RBP26.59■■□□□ 1.85
CLN3-240ENST00000631023 C2CD5Q86YS7 1000 aa26.59■■□□□ 1.85
CLN3-240ENST00000631023 UTRNP46939 3433 aa26.59■■□□□ 1.85
CLN3-240ENST00000631023 UBN2Q6ZU65 1347 aa26.59■■□□□ 1.85
CLN3-240ENST00000631023 RIC3Q7Z5B4 369 aa26.58■■□□□ 1.85
CLN3-240ENST00000631023 BCS1LQ9Y276 419 aa26.58■■□□□ 1.85
CLN3-240ENST00000631023 ARFGEF1Q9Y6D6 1849 aa26.58■■□□□ 1.85
CLN3-240ENST00000631023 IBTKQ9P2D0 1353 aaPredicted RBP26.58■■□□□ 1.85
CLN3-240ENST00000631023 TCERG1O14776 1098 aaKnown RBP26.58■■□□□ 1.85
CLN3-240ENST00000631023 SLC4A2P04920 1241 aa26.58■■□□□ 1.85
CLN3-240ENST00000631023 SLFN5Q08AF3 891 aa26.58■■□□□ 1.85
CLN3-240ENST00000631023 DALRD3Q5D0E6 543 aaKnown RBP26.57■■□□□ 1.84
CLN3-240ENST00000631023 SUSD4Q5VX71 490 aa26.57■■□□□ 1.84
CLN3-240ENST00000631023 UTP14AQ9BVJ6 771 aaKnown RBP26.55■■□□□ 1.84
CLN3-240ENST00000631023 NLRP10Q86W26 655 aa26.54■■□□□ 1.84
CLN3-240ENST00000631023 NUTM1Q86Y26 1132 aa26.54■■□□□ 1.84
CLN3-240ENST00000631023 CDCA7LQ96GN5 454 aa26.54■■□□□ 1.84
CLN3-240ENST00000631023 RNF123Q5XPI4 1314 aa26.53■■□□□ 1.84
CLN3-240ENST00000631023 ZNF622Q969S3 477 aaKnown RBP eCLIP26.53■■□□□ 1.84
CLN3-240ENST00000631023 NTSR2O95665 410 aa26.52■■□□□ 1.84
CLN3-240ENST00000631023 HNRNPUQ00839 825 aaKnown RBP eCLIP26.52■■□□□ 1.84
CLN3-240ENST00000631023 ERFEQ4G0M1 354 aa26.52■■□□□ 1.84
CLN3-240ENST00000631023 TTLL6Q8N841 843 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms