RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MYL6BP14649 208 aa23.36■■□□□ 1.33
CLN3-239ENST00000628023 TM4SF1P30408 202 aa23.36■■□□□ 1.33
CLN3-239ENST00000628023 DDR1Q08345 913 aa23.36■■□□□ 1.33
CLN3-239ENST00000628023 NARFQ9UHQ1 456 aa23.36■■□□□ 1.33
CLN3-239ENST00000628023 NBPF26B4DH59 902 aa23.35■■□□□ 1.33
CLN3-239ENST00000628023 NBPF10Q6P3W6 841 aaKnown RBP23.35■■□□□ 1.33
CLN3-239ENST00000628023 NBPF15Q8N660 670 aa23.35■■□□□ 1.33
CLN3-239ENST00000628023 C8orf58Q8NAV2 365 aa23.35■■□□□ 1.33
CLN3-239ENST00000628023 SPINK5Q9NQ38 1064 aaPredicted RBP23.35■■□□□ 1.33
CLN3-239ENST00000628023 KIAA1551Q9HCM1 1747 aa23.35■■□□□ 1.33
CLN3-239ENST00000628023 POLRMTO00411 1230 aaKnown RBP23.34■■□□□ 1.33
CLN3-239ENST00000628023 DALRD3Q5D0E6 543 aaKnown RBP23.34■■□□□ 1.33
CLN3-239ENST00000628023 TBC1D2BQ9UPU7 963 aa23.34■■□□□ 1.33
CLN3-239ENST00000628023 KCNA3P22001 575 aa23.33■■□□□ 1.33
CLN3-239ENST00000628023 DZIP3Q86Y13 1208 aaKnown RBP23.33■■□□□ 1.33
CLN3-239ENST00000628023 E9PSI1 815 aa23.32■■□□□ 1.32
CLN3-239ENST00000628023 CHMP4AQ9BY43 222 aa23.32■■□□□ 1.32
CLN3-239ENST00000628023 TWISTNBQ3B726 338 aaPredicted RBP23.31■■□□□ 1.32
CLN3-239ENST00000628023 KIF6Q6ZMV9 814 aa23.31■■□□□ 1.32
CLN3-239ENST00000628023 TSPYL6Q8N831 410 aa23.31■■□□□ 1.32
CLN3-239ENST00000628023 CHPF2Q9P2E5 772 aa23.31■■□□□ 1.32
CLN3-239ENST00000628023 ANXA1P04083 346 aa23.3■■□□□ 1.32
CLN3-239ENST00000628023 EXOSC9Q06265 439 aaKnown RBP23.3■■□□□ 1.32
CLN3-239ENST00000628023 NFIXQ14938 502 aa23.3■■□□□ 1.32
CLN3-239ENST00000628023 SCN7AQ01118 1682 aa23.29■■□□□ 1.32
CLN3-239ENST00000628023 PROSER3Q2NL68 480 aa23.29■■□□□ 1.32
CLN3-239ENST00000628023 DDX21Q9NR30 783 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-239ENST00000628023 DBF4Q9UBU7 674 aaPredicted RBP23.29■■□□□ 1.32
CLN3-239ENST00000628023 BRCA1P38398 1863 aaKnown RBP23.28■■□□□ 1.32
CLN3-239ENST00000628023 CHRNA5P30532 468 aa23.28■■□□□ 1.32
CLN3-239ENST00000628023 CCDC30Q5VVM6 783 aa23.28■■□□□ 1.32
CLN3-239ENST00000628023 ZNF652Q9Y2D9 606 aa23.28■■□□□ 1.32
CLN3-239ENST00000628023 ARFGEF1Q9Y6D6 1849 aa23.27■■□□□ 1.32
CLN3-239ENST00000628023 SERPINB2P05120 415 aa23.27■■□□□ 1.32
CLN3-239ENST00000628023 PDIA6Q15084 440 aa23.27■■□□□ 1.32
CLN3-239ENST00000628023 C9orf131Q5VYM1 1079 aa23.27■■□□□ 1.32
CLN3-239ENST00000628023 CDCA7LQ96GN5 454 aa23.27■■□□□ 1.32
CLN3-239ENST00000628023 CAMTA2O94983 1202 aa23.26■■□□□ 1.31
CLN3-239ENST00000628023 HSPA6P17066 643 aa23.26■■□□□ 1.31
CLN3-239ENST00000628023 SLFN5Q08AF3 891 aa23.26■■□□□ 1.31
CLN3-239ENST00000628023 STK31Q9BXU1 1019 aa23.26■■□□□ 1.31
CLN3-239ENST00000628023 BCORQ6W2J9 1755 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 KIF3CO14782 793 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 AIMP1Q12904 312 aaKnown RBP23.25■■□□□ 1.31
CLN3-239ENST00000628023 BICDL1Q6ZP65 573 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 TTLL7Q6ZT98 887 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 BCL2L12Q9HB09 334 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 HYPKQ9NX55 129 aa23.25■■□□□ 1.31
CLN3-239ENST00000628023 XAGE3Q8WTP9 111 aa23.24■■□□□ 1.31
CLN3-239ENST00000628023 MAP3K15Q6ZN16 1313 aa23.24■■□□□ 1.31
CLN3-239ENST00000628023 COPS6Q7L5N1 327 aa23.23■■□□□ 1.31
CLN3-239ENST00000628023 ZBTB3Q9H5J0 574 aa23.23■■□□□ 1.31
CLN3-239ENST00000628023 TCERG1O14776 1098 aaKnown RBP23.22■■□□□ 1.31
CLN3-239ENST00000628023 LRP10Q7Z4F1 713 aa23.22■■□□□ 1.31
CLN3-239ENST00000628023 RNF181Q9P0P0 153 aa23.22■■□□□ 1.31
CLN3-239ENST00000628023 ZBED9Q6R2W3 1325 aa23.22■■□□□ 1.31
CLN3-239ENST00000628023 H0YIN7 160 aa23.21■■□□□ 1.31
CLN3-239ENST00000628023 VAMP4O75379 141 aa23.21■■□□□ 1.31
CLN3-239ENST00000628023 TOMM70O94826 608 aa23.21■■□□□ 1.31
CLN3-239ENST00000628023 TBC1D9BQ66K14 1250 aa23.21■■□□□ 1.31
CLN3-239ENST00000628023 AFDNP55196 1824 aaKnown RBP23.2■■□□□ 1.3
CLN3-239ENST00000628023 ERVV-1B6SEH8 477 aa23.2■■□□□ 1.3
CLN3-239ENST00000628023 CLEC4GQ6UXB4 293 aa23.2■■□□□ 1.3
CLN3-239ENST00000628023 C2CD5Q86YS7 1000 aa23.2■■□□□ 1.3
CLN3-239ENST00000628023 C16orf71Q8IYS4 520 aaPredicted RBP23.2■■□□□ 1.3
CLN3-239ENST00000628023 TTLL6Q8N841 843 aa23.2■■□□□ 1.3
CLN3-239ENST00000628023 KDM2BQ8NHM5 1336 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 RGL2O15211 777 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 HLFQ16534 295 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 SETDB2Q96T68 719 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 PDZRN3Q9UPQ7 1066 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 NRXN2Q9P2S2 1712 aa23.19■■□□□ 1.3
CLN3-239ENST00000628023 CEP350Q5VT06 3117 aa23.18■■□□□ 1.3
CLN3-239ENST00000628023 CARMIL3Q8ND23 1372 aa23.18■■□□□ 1.3
CLN3-239ENST00000628023 NPHP1O15259 732 aa23.18■■□□□ 1.3
CLN3-239ENST00000628023 NIP7Q9Y221 180 aaKnown RBP eCLIP23.18■■□□□ 1.3
CLN3-239ENST00000628023 PDE6BP35913 854 aa23.17■■□□□ 1.3
CLN3-239ENST00000628023 NMRK2Q9NPI5 230 aa23.17■■□□□ 1.3
CLN3-239ENST00000628023 DDX58O95786 925 aaKnown RBP23.16■■□□□ 1.3
CLN3-239ENST00000628023 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
CLN3-239ENST00000628023 TRMT2AQ8IZ69 625 aaKnown RBP23.16■■□□□ 1.3
CLN3-239ENST00000628023 PHAXQ9H814 394 aaKnown RBP23.16■■□□□ 1.3
CLN3-239ENST00000628023 GIGYF2Q6Y7W6 1299 aaKnown RBP23.15■■□□□ 1.3
CLN3-239ENST00000628023 ANKRD13DQ6ZTN6 518 aa23.15■■□□□ 1.3
CLN3-239ENST00000628023 PLBD2Q8NHP8 589 aa23.15■■□□□ 1.3
CLN3-239ENST00000628023 BRIP1Q9BX63 1249 aa23.15■■□□□ 1.3
CLN3-239ENST00000628023 GPTP24298 496 aa23.14■■□□□ 1.29
CLN3-239ENST00000628023 HSP90AB3PQ58FF7 597 aa23.14■■□□□ 1.29
CLN3-239ENST00000628023 RIC3Q7Z5B4 369 aa23.14■■□□□ 1.29
CLN3-239ENST00000628023 NUP98P52948 1817 aa23.14■■□□□ 1.29
CLN3-239ENST00000628023 LMNB1P20700 586 aa23.13■■□□□ 1.29
CLN3-239ENST00000628023 APLP1P51693 650 aa23.13■■□□□ 1.29
CLN3-239ENST00000628023 NBPF5PQ86XG9 351 aaPredicted RBP23.13■■□□□ 1.29
CLN3-239ENST00000628023 ZNF622Q969S3 477 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-239ENST00000628023 ZC3H4Q9UPT8 1303 aaKnown RBP23.12■■□□□ 1.29
CLN3-239ENST00000628023 FAM177BA6PVY3 158 aa23.12■■□□□ 1.29
CLN3-239ENST00000628023 CNBD1Q8NA66 436 aa23.12■■□□□ 1.29
CLN3-239ENST00000628023 CT47B1P0C2W7 299 aaPredicted RBP23.11■■□□□ 1.29
CLN3-239ENST00000628023 ST5P78524 1137 aa23.11■■□□□ 1.29
CLN3-239ENST00000628023 RASSF7Q02833 373 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms