RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 SETDB2Q96T68 719 aa19.42■□□□□ 0.7
LINC00643-205ENST00000623219 LAMB2P55268 1798 aa19.42■□□□□ 0.7
LINC00643-205ENST00000623219 DALRD3Q5D0E6 543 aaKnown RBP19.41■□□□□ 0.7
LINC00643-205ENST00000623219 TRIM35Q9UPQ4 493 aa19.41■□□□□ 0.7
LINC00643-205ENST00000623219 PRR5LQ6MZQ0 368 aa19.4■□□□□ 0.7
LINC00643-205ENST00000623219 CNBD1Q8NA66 436 aa19.4■□□□□ 0.7
LINC00643-205ENST00000623219 PDZRN3Q9UPQ7 1066 aa19.39■□□□□ 0.69
LINC00643-205ENST00000623219 ST5P78524 1137 aa19.38■□□□□ 0.69
LINC00643-205ENST00000623219 BRIP1Q9BX63 1249 aa19.38■□□□□ 0.69
LINC00643-205ENST00000623219 CACNA1FO60840 1977 aa19.37■□□□□ 0.69
LINC00643-205ENST00000623219 NPHP1O15259 732 aa19.37■□□□□ 0.69
LINC00643-205ENST00000623219 PDE6BP35913 854 aa19.37■□□□□ 0.69
LINC00643-205ENST00000623219 C2CD5Q86YS7 1000 aa19.37■□□□□ 0.69
LINC00643-205ENST00000623219 MAP3K15Q6ZN16 1313 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 ERVV-1B6SEH8 477 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 H0YIN7 160 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 CHL1O00533 1208 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 MYL6BP14649 208 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 KIF6Q6ZMV9 814 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 ARHGAP27Q6ZUM4 889 aa19.36■□□□□ 0.69
LINC00643-205ENST00000623219 ANP32CO43423 234 aa19.35■□□□□ 0.69
LINC00643-205ENST00000623219 NBPF5PQ86XG9 351 aaPredicted RBP19.35■□□□□ 0.69
LINC00643-205ENST00000623219 NIP7Q9Y221 180 aaKnown RBP eCLIP19.35■□□□□ 0.69
LINC00643-205ENST00000623219 IBTKQ9P2D0 1353 aaPredicted RBP19.34■□□□□ 0.69
LINC00643-205ENST00000623219 APAF1O14727 1248 aa19.34■□□□□ 0.69
LINC00643-205ENST00000623219 HLFQ16534 295 aa19.34■□□□□ 0.69
LINC00643-205ENST00000623219 TTLL6Q8N841 843 aa19.34■□□□□ 0.69
LINC00643-205ENST00000623219 LAS1LQ9Y4W2 734 aaKnown RBP19.34■□□□□ 0.69
LINC00643-205ENST00000623219 DDX60Q8IY21 1712 aaKnown RBP19.34■□□□□ 0.69
LINC00643-205ENST00000623219 CCDC184Q52MB2 194 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 TTLL7Q6ZT98 887 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 CCDC24Q8N4L8 307 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 NGEFQ8N5V2 710 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 CFAP44Q96MT7 982 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 RIC1Q4ADV7 1423 aa19.33■□□□□ 0.68
LINC00643-205ENST00000623219 EIF2S2P20042 333 aaKnown RBP19.32■□□□□ 0.68
LINC00643-205ENST00000623219 CALD1Q05682 793 aaKnown RBP19.32■□□□□ 0.68
LINC00643-205ENST00000623219 LRP10Q7Z4F1 713 aa19.32■□□□□ 0.68
LINC00643-205ENST00000623219 HOXB7P09629 217 aa19.31■□□□□ 0.68
LINC00643-205ENST00000623219 PDIA6Q15084 440 aa19.31■□□□□ 0.68
LINC00643-205ENST00000623219 TPTE2Q6XPS3 522 aa19.31■□□□□ 0.68
LINC00643-205ENST00000623219 GPBP1L1Q9HC44 474 aaPredicted RBP19.31■□□□□ 0.68
LINC00643-205ENST00000623219 ZNF622Q969S3 477 aaKnown RBP eCLIP19.3■□□□□ 0.68
LINC00643-205ENST00000623219 ZBTB3Q9H5J0 574 aa19.3■□□□□ 0.68
LINC00643-205ENST00000623219 IFT57Q9NWB7 429 aa19.3■□□□□ 0.68
LINC00643-205ENST00000623219 ZNF853P0CG23 659 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 SRGNP10124 158 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 KRT24Q2M2I5 525 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 STYK1Q6J9G0 422 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 GIGYF2Q6Y7W6 1299 aaKnown RBP19.29■□□□□ 0.68
LINC00643-205ENST00000623219 NYXQ9GZU5 481 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 MRS2Q9HD23 443 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 ABCC12Q96J65 1359 aa19.29■□□□□ 0.68
LINC00643-205ENST00000623219 PROSER3Q2NL68 480 aa19.28■□□□□ 0.68
LINC00643-205ENST00000623219 C9orf131Q5VYM1 1079 aa19.28■□□□□ 0.68
LINC00643-205ENST00000623219 ZNF526Q8TF50 670 aaPredicted RBP19.28■□□□□ 0.68
LINC00643-205ENST00000623219 MASTLQ96GX5 879 aa19.28■□□□□ 0.68
LINC00643-205ENST00000623219 DDX21Q9NR30 783 aaKnown RBP eCLIP19.28■□□□□ 0.68
LINC00643-205ENST00000623219 MBIPQ9NS73 344 aa19.28■□□□□ 0.68
LINC00643-205ENST00000623219 UBN2Q6ZU65 1347 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 GNAI1P63096 354 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 RASSF7Q02833 373 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 NECTIN2Q92692 538 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 CNKSR1Q969H4 720 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 RNF181Q9P0P0 153 aa19.27■□□□□ 0.68
LINC00643-205ENST00000623219 MYH3P11055 1940 aa19.27■□□□□ 0.67
LINC00643-205ENST00000623219 ZC3H4Q9UPT8 1303 aaKnown RBP19.26■□□□□ 0.67
LINC00643-205ENST00000623219 KLRG2A4D1S0 409 aaPredicted RBP19.26■□□□□ 0.67
LINC00643-205ENST00000623219 FAM177BA6PVY3 158 aa19.26■□□□□ 0.67
LINC00643-205ENST00000623219 ANXA1P04083 346 aa19.26■□□□□ 0.67
LINC00643-205ENST00000623219 C1QTNF8P60827 252 aa19.26■□□□□ 0.67
LINC00643-205ENST00000623219 HDGFL1Q5TGJ6 251 aa19.26■□□□□ 0.67
LINC00643-205ENST00000623219 TAF1P21675 1872 aa19.26■□□□□ 0.67
LINC00643-205ENST00000623219 NPR1P16066 1061 aa19.25■□□□□ 0.67
LINC00643-205ENST00000623219 GPTP24298 496 aa19.25■□□□□ 0.67
LINC00643-205ENST00000623219 GTF2E1P29083 439 aaPredicted RBP19.25■□□□□ 0.67
LINC00643-205ENST00000623219 PRPF40BQ6NWY9 871 aaKnown RBP19.25■□□□□ 0.67
LINC00643-205ENST00000623219 ZNF34Q8IZ26 560 aa19.25■□□□□ 0.67
LINC00643-205ENST00000623219 CHPF2Q9P2E5 772 aa19.25■□□□□ 0.67
LINC00643-205ENST00000623219 CCDC27Q2M243 656 aa19.24■□□□□ 0.67
LINC00643-205ENST00000623219 PARP10Q53GL7 1025 aa19.24■□□□□ 0.67
LINC00643-205ENST00000623219 WDR90Q96KV7 1748 aa19.24■□□□□ 0.67
LINC00643-205ENST00000623219 NFKBIEO00221 500 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 C21orf2O43822 256 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 NTSR2O95665 410 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 LMNB1P20700 586 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 HSP90AB3PQ58FF7 597 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 SOGA3Q5TF21 947 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 DUSP27Q5VZP5 1158 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 COPS6Q7L5N1 327 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 XAGE3Q8WTP9 111 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 DBF4Q9UBU7 674 aaPredicted RBP19.23■□□□□ 0.67
LINC00643-205ENST00000623219 RNF123Q5XPI4 1314 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 LTBP3Q9NS15 1303 aa19.23■□□□□ 0.67
LINC00643-205ENST00000623219 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
LINC00643-205ENST00000623219 SUSD4Q5VX71 490 aa19.22■□□□□ 0.67
LINC00643-205ENST00000623219 PPP1R42Q7Z4L9 355 aa19.22■□□□□ 0.67
LINC00643-205ENST00000623219 NUTM1Q86Y26 1132 aa19.22■□□□□ 0.67
LINC00643-205ENST00000623219 LRRC37AA6NMS7 1700 aa19.22■□□□□ 0.67
LINC00643-205ENST00000623219 AIMP1Q12904 312 aaKnown RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms