RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SERPINB2P05120 415 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 RTL5Q5HYW3 569 aaPredicted RBP7.47□□□□□ -1.21
CPNE3-208ENST00000614678 NLGN1Q8N2Q7 840 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 UBN2Q6ZU65 1347 aa7.47□□□□□ -1.21
CPNE3-208ENST00000614678 IL6STP40189 918 aaPredicted RBP7.46□□□□□ -1.21
CPNE3-208ENST00000614678 DIEXFQ68CQ4 756 aaKnown RBP7.46□□□□□ -1.21
CPNE3-208ENST00000614678 ANKRD31Q8N7Z5 1873 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 PRELPP51888 382 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 DUSP27Q5VZP5 1158 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 ADRA2BP18089 450 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 PRR5LQ6MZQ0 368 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 BCS1LQ9Y276 419 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 PARP3Q9Y6F1 533 aa7.46□□□□□ -1.22
CPNE3-208ENST00000614678 COPS6Q7L5N1 327 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 G2E3Q7L622 706 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 CFAP44Q96MT7 982 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 TAF1P21675 1872 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 XAGE3Q8WTP9 111 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 COL4A1P02462 1669 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 NUP98P52948 1817 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 LAMB4A4D0S4 1761 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 SCN7AQ01118 1682 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 C10orf71Q711Q0 1435 aa7.45□□□□□ -1.22
CPNE3-208ENST00000614678 CACNA1SQ13698 1873 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 ZNF526Q8TF50 670 aaPredicted RBP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 NIP7Q9Y221 180 aaKnown RBP eCLIP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 COL11A2P13942 1736 aaPredicted RBP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 ATP5J2-PTCD1G3V325 749 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 BCORQ6W2J9 1755 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 ABCC12Q96J65 1359 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 BRCA1P38398 1863 aaKnown RBP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 SUSD4Q5VX71 490 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 PNNQ9H307 717 aaKnown RBP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 KIF13BQ9NQT8 1826 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 YY1P25490 414 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 HDGFL1Q5TGJ6 251 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 CD2APQ9Y5K6 639 aa7.44□□□□□ -1.22
CPNE3-208ENST00000614678 TNRC6CQ9HCJ0 1690 aaKnown RBP7.44□□□□□ -1.22
CPNE3-208ENST00000614678 FANCIQ9NVI1 1328 aa7.43□□□□□ -1.22
CPNE3-208ENST00000614678 ERFEQ4G0M1 354 aa7.43□□□□□ -1.22
CPNE3-208ENST00000614678 TEX13AQ9BXU3 409 aaPredicted RBP7.43□□□□□ -1.22
CPNE3-208ENST00000614678 RASSF7Q02833 373 aa7.43□□□□□ -1.22
CPNE3-208ENST00000614678 EXOSC9Q06265 439 aaKnown RBP7.43□□□□□ -1.22
CPNE3-208ENST00000614678 SETDB2Q96T68 719 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 NRXN2Q9P2S2 1712 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 MAP3K15Q6ZN16 1313 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 SLX4Q8IY92 1834 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 BCL2L13Q9BXK5 485 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 IFT57Q9NWB7 429 aa7.42□□□□□ -1.22
CPNE3-208ENST00000614678 HCLS1P14317 486 aaPredicted RBP7.41□□□□□ -1.22
CPNE3-208ENST00000614678 LMOD3Q0VAK6 560 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 ZNF622Q969S3 477 aaKnown RBP eCLIP7.41□□□□□ -1.22
CPNE3-208ENST00000614678 NBPF5PQ86XG9 351 aaPredicted RBP7.41□□□□□ -1.22
CPNE3-208ENST00000614678 C21orf2O43822 256 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 C2CD5Q86YS7 1000 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 CNBD1Q8NA66 436 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 ZNF784Q8NCA9 323 aaPredicted RBP7.41□□□□□ -1.22
CPNE3-208ENST00000614678 CCDC85AQ96PX6 553 aaPredicted RBP7.41□□□□□ -1.22
CPNE3-208ENST00000614678 ZNF521Q96K83 1311 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 ARHGAP27Q6ZUM4 889 aa7.41□□□□□ -1.22
CPNE3-208ENST00000614678 F6X3S4 739 aa7.4□□□□□ -1.22
CPNE3-208ENST00000614678 NPHP1O15259 732 aa7.4□□□□□ -1.22
CPNE3-208ENST00000614678 FAM89AQ96GI7 184 aa7.4□□□□□ -1.22
CPNE3-208ENST00000614678 DDX21Q9NR30 783 aaKnown RBP eCLIP7.4□□□□□ -1.22
CPNE3-208ENST00000614678 WTIPA6NIX2 430 aaPredicted RBP7.4□□□□□ -1.22
CPNE3-208ENST00000614678 GNAI1P63096 354 aa7.4□□□□□ -1.22
CPNE3-208ENST00000614678 TWISTNBQ3B726 338 aaPredicted RBP7.4□□□□□ -1.22
CPNE3-208ENST00000614678 NPM2Q86SE8 214 aaKnown RBP7.4□□□□□ -1.22
CPNE3-208ENST00000614678 ZNF34Q8IZ26 560 aa7.4□□□□□ -1.22
CPNE3-208ENST00000614678 GIGYF2Q6Y7W6 1299 aaKnown RBP7.4□□□□□ -1.23
CPNE3-208ENST00000614678 VAMP4O75379 141 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 NTSR2O95665 410 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 CWF19L2Q2TBE0 894 aaKnown RBP7.39□□□□□ -1.23
CPNE3-208ENST00000614678 CHD4Q14839 1912 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 SRGNP10124 158 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 CCDC88AQ3V6T2 1871 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 A0A087WZG4 1122 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 SLC4A2P04920 1241 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 TGFB2P61812 414 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 PIM2Q9P1W9 311 aa7.39□□□□□ -1.23
CPNE3-208ENST00000614678 CCDC27Q2M243 656 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 KIF6Q6ZMV9 814 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 NLRP10Q86W26 655 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 PI4KAP2A4QPH2 592 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 NFKBIEO00221 500 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 ANKRD13DQ6ZTN6 518 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 PI4KAP1Q8N8J0 262 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 TNNQ9UQP3 1299 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 ADCY9O60503 1353 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 ARFGEF2Q9Y6D5 1785 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 MYD88Q99836 296 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 IGKV5-2P06315 115 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 DALRD3Q5D0E6 543 aaKnown RBP7.38□□□□□ -1.23
CPNE3-208ENST00000614678 PRPF40BQ6NWY9 871 aaKnown RBP7.38□□□□□ -1.23
CPNE3-208ENST00000614678 CLEC4GQ6UXB4 293 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 BRIP1Q9BX63 1249 aa7.38□□□□□ -1.23
CPNE3-208ENST00000614678 DBF4Q9UBU7 674 aaPredicted RBP7.38□□□□□ -1.23
CPNE3-208ENST00000614678 GTF2E1P29083 439 aaPredicted RBP7.37□□□□□ -1.23
CPNE3-208ENST00000614678 MAP3K2Q9Y2U5 619 aa7.37□□□□□ -1.23
CPNE3-208ENST00000614678 SBF1O95248 1867 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms