RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 WDR63Q8IWG1 891 aa21.85■■□□□ 1.09
TRIM28-215ENST00000601150 PELP1Q8IZL8 1130 aaKnown RBP21.85■■□□□ 1.09
TRIM28-215ENST00000601150 SETDB2Q96T68 719 aa21.85■■□□□ 1.09
TRIM28-215ENST00000601150 MAP3K15Q6ZN16 1313 aa21.84■■□□□ 1.09
TRIM28-215ENST00000601150 ERVV-1B6SEH8 477 aa21.84■■□□□ 1.09
TRIM28-215ENST00000601150 PROSER3Q2NL68 480 aa21.84■■□□□ 1.09
TRIM28-215ENST00000601150 TTLL7Q6ZT98 887 aa21.84■■□□□ 1.09
TRIM28-215ENST00000601150 LRP10Q7Z4F1 713 aa21.84■■□□□ 1.09
TRIM28-215ENST00000601150 DDX21Q9NR30 783 aaKnown RBP eCLIP21.84■■□□□ 1.09
TRIM28-215ENST00000601150 BRCA1P38398 1863 aaKnown RBP21.83■■□□□ 1.09
TRIM28-215ENST00000601150 TSR2Q969E8 191 aaKnown RBP21.83■■□□□ 1.09
TRIM28-215ENST00000601150 ANXA1P04083 346 aa21.82■■□□□ 1.08
TRIM28-215ENST00000601150 HLFQ16534 295 aa21.82■■□□□ 1.08
TRIM28-215ENST00000601150 C8orf58Q8NAV2 365 aa21.82■■□□□ 1.08
TRIM28-215ENST00000601150 CHPF2Q9P2E5 772 aa21.82■■□□□ 1.08
TRIM28-215ENST00000601150 ANKRD31Q8N7Z5 1873 aa21.81■■□□□ 1.08
TRIM28-215ENST00000601150 A0A0G2JLW4 131 aa21.81■■□□□ 1.08
TRIM28-215ENST00000601150 ELL2O00472 640 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-215ENST00000601150 ZBTB3Q9H5J0 574 aa21.81■■□□□ 1.08
TRIM28-215ENST00000601150 DBF4Q9UBU7 674 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-215ENST00000601150 CHD4Q14839 1912 aa21.8■■□□□ 1.08
TRIM28-215ENST00000601150 ANKRD36CQ5JPF3 1778 aa21.8■■□□□ 1.08
TRIM28-215ENST00000601150 DLEC1Q9Y238 1755 aa21.8■■□□□ 1.08
TRIM28-215ENST00000601150 DPEP1P16444 411 aa21.8■■□□□ 1.08
TRIM28-215ENST00000601150 MIER1Q8N108 512 aa21.8■■□□□ 1.08
TRIM28-215ENST00000601150 NIP7Q9Y221 180 aaKnown RBP eCLIP21.8■■□□□ 1.08
TRIM28-215ENST00000601150 YBX3P16989 372 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRIM28-215ENST00000601150 CHMP4AQ9BY43 222 aa21.79■■□□□ 1.08
TRIM28-215ENST00000601150 ATP10DQ9P241 1426 aa21.79■■□□□ 1.08
TRIM28-215ENST00000601150 NPHP1O15259 732 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 PRR5LQ6MZQ0 368 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 COPS6Q7L5N1 327 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 CNBD1Q8NA66 436 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 XAGE3Q8WTP9 111 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 HYPKQ9NX55 129 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 FANCIQ9NVI1 1328 aa21.78■■□□□ 1.08
TRIM28-215ENST00000601150 GRIN3BO60391 1043 aa21.77■■□□□ 1.08
TRIM28-215ENST00000601150 AIMP1Q12904 312 aaKnown RBP21.77■■□□□ 1.08
TRIM28-215ENST00000601150 GIGYF2Q6Y7W6 1299 aaKnown RBP21.77■■□□□ 1.08
TRIM28-215ENST00000601150 NBPF5PQ86XG9 351 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-215ENST00000601150 TSPYL6Q8N831 410 aa21.77■■□□□ 1.08
TRIM28-215ENST00000601150 WWC3Q9ULE0 1092 aa21.77■■□□□ 1.08
TRIM28-215ENST00000601150 ST5P78524 1137 aa21.76■■□□□ 1.07
TRIM28-215ENST00000601150 CCDC30Q5VVM6 783 aa21.76■■□□□ 1.07
TRIM28-215ENST00000601150 ARFGEF1Q9Y6D6 1849 aa21.76■■□□□ 1.07
TRIM28-215ENST00000601150 KCNA3P22001 575 aa21.75■■□□□ 1.07
TRIM28-215ENST00000601150 CHRNA5P30532 468 aa21.75■■□□□ 1.07
TRIM28-215ENST00000601150 TWISTNBQ3B726 338 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-215ENST00000601150 BRIP1Q9BX63 1249 aa21.75■■□□□ 1.07
TRIM28-215ENST00000601150 MYH16Q9H6N6 1097 aa21.75■■□□□ 1.07
TRIM28-215ENST00000601150 ZNF521Q96K83 1311 aa21.75■■□□□ 1.07
TRIM28-215ENST00000601150 GOLGA2Q08379 1002 aa21.74■■□□□ 1.07
TRIM28-215ENST00000601150 TPTE2Q6XPS3 522 aa21.74■■□□□ 1.07
TRIM28-215ENST00000601150 CCDC24Q8N4L8 307 aa21.74■■□□□ 1.07
TRIM28-215ENST00000601150 PIM2Q9P1W9 311 aa21.74■■□□□ 1.07
TRIM28-215ENST00000601150 COL11A2P13942 1736 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-215ENST00000601150 ARFGEF2Q9Y6D5 1785 aa21.74■■□□□ 1.07
TRIM28-215ENST00000601150 FAM177BA6PVY3 158 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 GPTP24298 496 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 PDE6BP35913 854 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 C2CD5Q86YS7 1000 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 ZNF34Q8IZ26 560 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 SPINK5Q9NQ38 1064 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-215ENST00000601150 PDZRN3Q9UPQ7 1066 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 CACNA1FO60840 1977 aa21.73■■□□□ 1.07
TRIM28-215ENST00000601150 H0YIN7 160 aa21.72■■□□□ 1.07
TRIM28-215ENST00000601150 HSP90AB3PQ58FF7 597 aa21.72■■□□□ 1.07
TRIM28-215ENST00000601150 PLBD2Q8NHP8 589 aa21.72■■□□□ 1.07
TRIM28-215ENST00000601150 NYXQ9GZU5 481 aa21.72■■□□□ 1.07
TRIM28-215ENST00000601150 BCS1LQ9Y276 419 aa21.72■■□□□ 1.07
TRIM28-215ENST00000601150 UBN2Q6ZU65 1347 aa21.71■■□□□ 1.07
TRIM28-215ENST00000601150 IBTKQ9P2D0 1353 aaPredicted RBP21.71■■□□□ 1.07
TRIM28-215ENST00000601150 GTF2E1P29083 439 aaPredicted RBP21.7■■□□□ 1.06
TRIM28-215ENST00000601150 EXOSC9Q06265 439 aaKnown RBP21.7■■□□□ 1.06
TRIM28-215ENST00000601150 PARP10Q53GL7 1025 aa21.7■■□□□ 1.06
TRIM28-215ENST00000601150 DALRD3Q5D0E6 543 aaKnown RBP21.7■■□□□ 1.06
TRIM28-215ENST00000601150 ANKRD13DQ6ZTN6 518 aa21.7■■□□□ 1.06
TRIM28-215ENST00000601150 STK31Q9BXU1 1019 aa21.7■■□□□ 1.06
TRIM28-215ENST00000601150 PHAXQ9H814 394 aaKnown RBP21.69■■□□□ 1.06
TRIM28-215ENST00000601150 CACNA1SQ13698 1873 aa21.69■■□□□ 1.06
TRIM28-215ENST00000601150 TCIRG1Q13488 830 aa21.68■■□□□ 1.06
TRIM28-215ENST00000601150 SUSD4Q5VX71 490 aa21.68■■□□□ 1.06
TRIM28-215ENST00000601150 PPP1R42Q7Z4L9 355 aa21.68■■□□□ 1.06
TRIM28-215ENST00000601150 TNRC6CQ9HCJ0 1690 aaKnown RBP21.67■■□□□ 1.06
TRIM28-215ENST00000601150 YY1P25490 414 aa21.67■■□□□ 1.06
TRIM28-215ENST00000601150 TCERG1O14776 1098 aaKnown RBP21.66■■□□□ 1.06
TRIM28-215ENST00000601150 VAMP4O75379 141 aa21.66■■□□□ 1.06
TRIM28-215ENST00000601150 NTSR2O95665 410 aa21.66■■□□□ 1.06
TRIM28-215ENST00000601150 NUTM1Q86Y26 1132 aa21.66■■□□□ 1.06
TRIM28-215ENST00000601150 TTLL6Q8N841 843 aa21.66■■□□□ 1.06
TRIM28-215ENST00000601150 ABCC12Q96J65 1359 aa21.65■■□□□ 1.06
TRIM28-215ENST00000601150 E9PSI1 815 aa21.65■■□□□ 1.06
TRIM28-215ENST00000601150 ERFEQ4G0M1 354 aa21.65■■□□□ 1.06
TRIM28-215ENST00000601150 RIC3Q7Z5B4 369 aa21.65■■□□□ 1.06
TRIM28-215ENST00000601150 NLRP10Q86W26 655 aa21.65■■□□□ 1.06
TRIM28-215ENST00000601150 ZNF622Q969S3 477 aaKnown RBP eCLIP21.65■■□□□ 1.06
TRIM28-215ENST00000601150 UTP14AQ9BVJ6 771 aaKnown RBP21.65■■□□□ 1.06
TRIM28-215ENST00000601150 RIC1Q4ADV7 1423 aa21.64■■□□□ 1.06
TRIM28-215ENST00000601150 RNF123Q5XPI4 1314 aa21.64■■□□□ 1.05
TRIM28-215ENST00000601150 DDX58O95786 925 aaKnown RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms