RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MAP3K15Q6ZN16 1313 aa18.26■□□□□ 0.51
UPF1-211ENST00000600868 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.26■□□□□ 0.51
UPF1-211ENST00000600868 PI4KAP2A4QPH2 592 aa18.26■□□□□ 0.51
UPF1-211ENST00000600868 ERVV-1B6SEH8 477 aa18.26■□□□□ 0.51
UPF1-211ENST00000600868 PI4KAP1Q8N8J0 262 aa18.26■□□□□ 0.51
UPF1-211ENST00000600868 ARHGEF1Q92888 912 aaKnown RBP18.26■□□□□ 0.51
UPF1-211ENST00000600868 ADCY9O60503 1353 aa18.26■□□□□ 0.51
UPF1-211ENST00000600868 RGL2O15211 777 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 PLIN1O60240 522 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 MS4A1P11836 297 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 RIC3Q7Z5B4 369 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 NARFQ9UHQ1 456 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 TBC1D2BQ9UPU7 963 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 QSER1Q2KHR3 1735 aa18.25■□□□□ 0.51
UPF1-211ENST00000600868 TUBGCP6Q96RT7 1819 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 CAMTA2O94983 1202 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 PDE3AQ14432 1141 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 SMIM5Q71RC9 77 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 DNAAF4Q8WXU2 420 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 ARXQ96QS3 562 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 MAP3K2Q9Y2U5 619 aa18.24■□□□□ 0.51
UPF1-211ENST00000600868 ABCC4O15439 1325 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 F6X3S4 739 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 PHF14O94880 888 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 RFC4P35249 363 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 DZIP1LQ8IYY4 767 aaKnown RBP18.23■□□□□ 0.51
UPF1-211ENST00000600868 ZBTB3Q9H5J0 574 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 C4AP0C0L4 1744 aa18.23■□□□□ 0.51
UPF1-211ENST00000600868 BCORQ6W2J9 1755 aa18.22■□□□□ 0.51
UPF1-211ENST00000600868 ARFGEF2Q9Y6D5 1785 aa18.22■□□□□ 0.51
UPF1-211ENST00000600868 ZPR1O75312 459 aa18.22■□□□□ 0.51
UPF1-211ENST00000600868 GIGYF2Q6Y7W6 1299 aaKnown RBP18.22■□□□□ 0.51
UPF1-211ENST00000600868 METTL22Q9BUU2 404 aaPredicted RBP18.22■□□□□ 0.51
UPF1-211ENST00000600868 PNPLA7Q6ZV29 1317 aa18.22■□□□□ 0.51
UPF1-211ENST00000600868 USP42Q9H9J4 1324 aaKnown RBP18.22■□□□□ 0.51
UPF1-211ENST00000600868 PXDNLA1KZ92 1463 aa18.21■□□□□ 0.51
UPF1-211ENST00000600868 CLEC4GQ6UXB4 293 aa18.21■□□□□ 0.51
UPF1-211ENST00000600868 COL23A1Q86Y22 540 aaPredicted RBP18.21■□□□□ 0.51
UPF1-211ENST00000600868 FTSJ3Q8IY81 847 aaKnown RBP18.21■□□□□ 0.51
UPF1-211ENST00000600868 CLUAP1Q96AJ1 413 aa18.21■□□□□ 0.51
UPF1-211ENST00000600868 TNNQ9UQP3 1299 aa18.21■□□□□ 0.51
UPF1-211ENST00000600868 SCN7AQ01118 1682 aa18.21■□□□□ 0.51
UPF1-211ENST00000600868 TCIRG1Q13488 830 aa18.2■□□□□ 0.5
UPF1-211ENST00000600868 HLFQ16534 295 aa18.2■□□□□ 0.5
UPF1-211ENST00000600868 HSP90AB3PQ58FF7 597 aa18.2■□□□□ 0.5
UPF1-211ENST00000600868 INTS3Q68E01 1043 aaKnown RBP18.2■□□□□ 0.5
UPF1-211ENST00000600868 SRP68Q9UHB9 627 aaKnown RBP18.2■□□□□ 0.5
UPF1-211ENST00000600868 ZNF652Q9Y2D9 606 aa18.2■□□□□ 0.5
UPF1-211ENST00000600868 ATP10DQ9P241 1426 aa18.2■□□□□ 0.5
UPF1-211ENST00000600868 NUP98P52948 1817 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 RLBP1P12271 317 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 CCT4P50991 539 aaKnown RBP18.19■□□□□ 0.5
UPF1-211ENST00000600868 NEXNQ0ZGT2 675 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 BEND3Q5T5X7 828 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 USPL1Q5W0Q7 1092 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 SLC4A10Q6U841 1118 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 PANK1Q8TE04 598 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 BCL2L12Q9HB09 334 aa18.19■□□□□ 0.5
UPF1-211ENST00000600868 N4BP2Q86UW6 1770 aaPredicted RBP18.18■□□□□ 0.5
UPF1-211ENST00000600868 TRIM28Q13263 835 aaKnown RBP18.18■□□□□ 0.5
UPF1-211ENST00000600868 C20orf194Q5TEA3 1177 aa18.18■□□□□ 0.5
UPF1-211ENST00000600868 LINS1Q8NG48 757 aa18.18■□□□□ 0.5
UPF1-211ENST00000600868 MYD88Q99836 296 aa18.18■□□□□ 0.5
UPF1-211ENST00000600868 IBTKQ9P2D0 1353 aaPredicted RBP18.17■□□□□ 0.5
UPF1-211ENST00000600868 ALDH1L1O75891 902 aa18.17■□□□□ 0.5
UPF1-211ENST00000600868 TMEM57Q8N5G2 664 aa18.17■□□□□ 0.5
UPF1-211ENST00000600868 ISCA1Q9BUE6 129 aa18.17■□□□□ 0.5
UPF1-211ENST00000600868 MSH5O43196 834 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 IGKV5-2P06315 115 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 GYS1P13807 737 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 ZNF34Q8IZ26 560 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 SRCIN1Q9C0H9 1055 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 ANKRD36CQ5JPF3 1778 aa18.16■□□□□ 0.5
UPF1-211ENST00000600868 NEURL1BA8MQ27 555 aa18.15■□□□□ 0.5
UPF1-211ENST00000600868 ATP5J2-PTCD1G3V325 749 aa18.14■□□□□ 0.49
UPF1-211ENST00000600868 SOCS7O14512 581 aa18.14■□□□□ 0.49
UPF1-211ENST00000600868 FKBP8Q14318 412 aa18.14■□□□□ 0.49
UPF1-211ENST00000600868 MVPQ14764 893 aaKnown RBP18.14■□□□□ 0.49
UPF1-211ENST00000600868 CWF19L2Q2TBE0 894 aaKnown RBP18.14■□□□□ 0.49
UPF1-211ENST00000600868 NLGN1Q8N2Q7 840 aa18.14■□□□□ 0.49
UPF1-211ENST00000600868 CCDC191Q8NCU4 936 aa18.14■□□□□ 0.49
UPF1-211ENST00000600868 PARP10Q53GL7 1025 aa18.13■□□□□ 0.49
UPF1-211ENST00000600868 TBC1D9BQ66K14 1250 aa18.13■□□□□ 0.49
UPF1-211ENST00000600868 ITPRIPQ8IWB1 547 aa18.13■□□□□ 0.49
UPF1-211ENST00000600868 SLC16A10Q8TF71 515 aa18.13■□□□□ 0.49
UPF1-211ENST00000600868 CWC25Q9NXE8 425 aaPredicted RBP18.13■□□□□ 0.49
UPF1-211ENST00000600868 NIP7Q9Y221 180 aaKnown RBP eCLIP18.13■□□□□ 0.49
UPF1-211ENST00000600868 COG6Q9Y2V7 657 aa18.13■□□□□ 0.49
UPF1-211ENST00000600868 AFDNP55196 1824 aaKnown RBP18.12■□□□□ 0.49
UPF1-211ENST00000600868 GPTP24298 496 aa18.12■□□□□ 0.49
UPF1-211ENST00000600868 GCKRQ14397 625 aa18.12■□□□□ 0.49
UPF1-211ENST00000600868 NLRP10Q86W26 655 aa18.12■□□□□ 0.49
UPF1-211ENST00000600868 UBN2Q6ZU65 1347 aa18.12■□□□□ 0.49
UPF1-211ENST00000600868 TM4SF1P30408 202 aa18.11■□□□□ 0.49
UPF1-211ENST00000600868 NFIXQ14938 502 aa18.11■□□□□ 0.49
UPF1-211ENST00000600868 R3HDM1Q15032 1099 aaKnown RBP18.11■□□□□ 0.49
UPF1-211ENST00000600868 SETDB2Q96T68 719 aa18.11■□□□□ 0.49
UPF1-211ENST00000600868 DDX19BQ9UMR2 479 aa18.11■□□□□ 0.49
UPF1-211ENST00000600868 CASZ1Q86V15 1759 aa18.11■□□□□ 0.49
UPF1-211ENST00000600868 CRBNQ96SW2 442 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms