RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 PRKRIP1Q9H875 184 aaPredicted RBP20.77■□□□□ 0.92
VRK3-221ENST00000600284 TSPYL4Q9UJ04 414 aa20.77■□□□□ 0.92
VRK3-221ENST00000600284 ERBB4Q15303 1308 aa20.77■□□□□ 0.91
VRK3-221ENST00000600284 ZC3H4Q9UPT8 1303 aaKnown RBP20.77■□□□□ 0.91
VRK3-221ENST00000600284 STYK1Q6J9G0 422 aa20.76■□□□□ 0.91
VRK3-221ENST00000600284 CCDC24Q8N4L8 307 aa20.76■□□□□ 0.91
VRK3-221ENST00000600284 CNKSR1Q969H4 720 aa20.76■□□□□ 0.91
VRK3-221ENST00000600284 RUNDC1Q96C34 613 aa20.76■□□□□ 0.91
VRK3-221ENST00000600284 NIP7Q9Y221 180 aaKnown RBP eCLIP20.76■□□□□ 0.91
VRK3-221ENST00000600284 LAMB4A4D0S4 1761 aa20.76■□□□□ 0.91
VRK3-221ENST00000600284 ANKRD31Q8N7Z5 1873 aa20.75■□□□□ 0.91
VRK3-221ENST00000600284 SRGNP10124 158 aa20.75■□□□□ 0.91
VRK3-221ENST00000600284 LMNB1P20700 586 aa20.75■□□□□ 0.91
VRK3-221ENST00000600284 MASTLQ96GX5 879 aa20.75■□□□□ 0.91
VRK3-221ENST00000600284 KDM2BQ8NHM5 1336 aa20.75■□□□□ 0.91
VRK3-221ENST00000600284 KLRG2A4D1S0 409 aaPredicted RBP20.74■□□□□ 0.91
VRK3-221ENST00000600284 HLFQ16534 295 aa20.74■□□□□ 0.91
VRK3-221ENST00000600284 RRP7AQ9Y3A4 280 aaKnown RBP20.74■□□□□ 0.91
VRK3-221ENST00000600284 TOMM70O94826 608 aa20.73■□□□□ 0.91
VRK3-221ENST00000600284 RASSF7Q02833 373 aa20.73■□□□□ 0.91
VRK3-221ENST00000600284 MAP3K15Q6ZN16 1313 aa20.73■□□□□ 0.91
VRK3-221ENST00000600284 SBF1O95248 1867 aa20.73■□□□□ 0.91
VRK3-221ENST00000600284 SOGA3Q5TF21 947 aa20.72■□□□□ 0.91
VRK3-221ENST00000600284 KIF6Q6ZMV9 814 aa20.72■□□□□ 0.91
VRK3-221ENST00000600284 CCDC146Q8IYE0 955 aa20.72■□□□□ 0.91
VRK3-221ENST00000600284 NGEFQ8N5V2 710 aa20.72■□□□□ 0.91
VRK3-221ENST00000600284 ADAMTS8Q9UP79 889 aa20.72■□□□□ 0.91
VRK3-221ENST00000600284 NFKBIEO00221 500 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 C21orf2O43822 256 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 MYL6BP14649 208 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 HSPA6P17066 643 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 ZEB1P37275 1124 aaPredicted RBP20.71■□□□□ 0.91
VRK3-221ENST00000600284 NYXQ9GZU5 481 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 NMRK2Q9NPI5 230 aa20.71■□□□□ 0.91
VRK3-221ENST00000600284 CHL1O00533 1208 aa20.7■□□□□ 0.9
VRK3-221ENST00000600284 NPR1P16066 1061 aa20.7■□□□□ 0.9
VRK3-221ENST00000600284 NEUROD2Q15784 382 aa20.7■□□□□ 0.9
VRK3-221ENST00000600284 TTLL7Q6ZT98 887 aa20.7■□□□□ 0.9
VRK3-221ENST00000600284 GTF2E1P29083 439 aaPredicted RBP20.69■□□□□ 0.9
VRK3-221ENST00000600284 PRELPP51888 382 aa20.69■□□□□ 0.9
VRK3-221ENST00000600284 PRPF40BQ6NWY9 871 aaKnown RBP20.69■□□□□ 0.9
VRK3-221ENST00000600284 TRIM35Q9UPQ4 493 aa20.69■□□□□ 0.9
VRK3-221ENST00000600284 LTBP3Q9NS15 1303 aa20.69■□□□□ 0.9
VRK3-221ENST00000600284 COL11A2P13942 1736 aaPredicted RBP20.68■□□□□ 0.9
VRK3-221ENST00000600284 PDIA6Q15084 440 aa20.68■□□□□ 0.9
VRK3-221ENST00000600284 GLTPD2A6NH11 291 aa20.67■□□□□ 0.9
VRK3-221ENST00000600284 EIF2S2P20042 333 aaKnown RBP20.67■□□□□ 0.9
VRK3-221ENST00000600284 GIGYF2Q6Y7W6 1299 aaKnown RBP20.67■□□□□ 0.9
VRK3-221ENST00000600284 LRP10Q7Z4F1 713 aa20.67■□□□□ 0.9
VRK3-221ENST00000600284 C16orf71Q8IYS4 520 aaPredicted RBP20.67■□□□□ 0.9
VRK3-221ENST00000600284 RBM46Q8TBY0 533 aaKnown RBP20.67■□□□□ 0.9
VRK3-221ENST00000600284 ZNF219Q9P2Y4 722 aaPredicted RBP20.67■□□□□ 0.9
VRK3-221ENST00000600284 FAM177BA6PVY3 158 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 ALDH1B1P30837 517 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 ZNF34Q8IZ26 560 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 C7orf43Q8WVR3 580 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 TAOK3Q9H2K8 898 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 ZBTB3Q9H5J0 574 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 RRAGCQ9HB90 399 aa20.66■□□□□ 0.9
VRK3-221ENST00000600284 IBTKQ9P2D0 1353 aaPredicted RBP20.66■□□□□ 0.9
VRK3-221ENST00000600284 CRY2Q49AN0 593 aa20.64■□□□□ 0.89
VRK3-221ENST00000600284 PARP10Q53GL7 1025 aa20.64■□□□□ 0.89
VRK3-221ENST00000600284 DPY19L2Q6NUT2 758 aa20.64■□□□□ 0.89
VRK3-221ENST00000600284 NUP98P52948 1817 aa20.64■□□□□ 0.89
VRK3-221ENST00000600284 SLX4Q8IY92 1834 aa20.64■□□□□ 0.89
VRK3-221ENST00000600284 FER1L6Q2WGJ9 1857 aa20.63■□□□□ 0.89
VRK3-221ENST00000600284 PPP1R42Q7Z4L9 355 aa20.63■□□□□ 0.89
VRK3-221ENST00000600284 CFAP44Q96MT7 982 aa20.63■□□□□ 0.89
VRK3-221ENST00000600284 RIC1Q4ADV7 1423 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 ARFGEF2Q9Y6D5 1785 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 UBN2Q6ZU65 1347 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 HOXB7P09629 217 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 FSTL1Q12841 308 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 ERFEQ4G0M1 354 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 CCDC93Q567U6 631 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 SUSD4Q5VX71 490 aa20.62■□□□□ 0.89
VRK3-221ENST00000600284 LAS1LQ9Y4W2 734 aaKnown RBP20.62■□□□□ 0.89
VRK3-221ENST00000600284 VEGFAP15692 232 aaPredicted RBP20.61■□□□□ 0.89
VRK3-221ENST00000600284 GPTP24298 496 aa20.61■□□□□ 0.89
VRK3-221ENST00000600284 APLP1P51693 650 aa20.61■□□□□ 0.89
VRK3-221ENST00000600284 PROSER3Q2NL68 480 aa20.61■□□□□ 0.89
VRK3-221ENST00000600284 NUTM1Q86Y26 1132 aa20.61■□□□□ 0.89
VRK3-221ENST00000600284 DDX21Q9NR30 783 aaKnown RBP eCLIP20.61■□□□□ 0.89
VRK3-221ENST00000600284 TNRC6CQ9HCJ0 1690 aaKnown RBP20.61■□□□□ 0.89
VRK3-221ENST00000600284 HSP90AB3PQ58FF7 597 aa20.6■□□□□ 0.89
VRK3-221ENST00000600284 RTKN2Q8IZC4 609 aa20.6■□□□□ 0.89
VRK3-221ENST00000600284 CCDC88AQ3V6T2 1871 aa20.59■□□□□ 0.89
VRK3-221ENST00000600284 NTSR2O95665 410 aa20.59■□□□□ 0.89
VRK3-221ENST00000600284 HOXA10P31260 410 aaPredicted RBP20.59■□□□□ 0.89
VRK3-221ENST00000600284 CALD1Q05682 793 aaKnown RBP20.59■□□□□ 0.89
VRK3-221ENST00000600284 COPS6Q7L5N1 327 aa20.59■□□□□ 0.89
VRK3-221ENST00000600284 ABCC12Q96J65 1359 aa20.59■□□□□ 0.89
VRK3-221ENST00000600284 RNF123Q5XPI4 1314 aa20.58■□□□□ 0.89
VRK3-221ENST00000600284 APAF1O14727 1248 aa20.58■□□□□ 0.89
VRK3-221ENST00000600284 ANXA1P04083 346 aa20.58■□□□□ 0.89
VRK3-221ENST00000600284 FKBP4Q02790 459 aaKnown RBP eCLIP20.58■□□□□ 0.89
VRK3-221ENST00000600284 KRT24Q2M2I5 525 aa20.58■□□□□ 0.89
VRK3-221ENST00000600284 CC2D2BQ6DHV5 1058 aa20.58■□□□□ 0.89
VRK3-221ENST00000600284 DICER1Q9UPY3 1922 aaKnown RBP20.57■□□□□ 0.88
VRK3-221ENST00000600284 ZNF853P0CG23 659 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms