RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZBTB3Q9H5J0 574 aa19.71■□□□□ 0.75
LIG1-219ENST00000600055 DDX21Q9NR30 783 aaKnown RBP eCLIP19.71■□□□□ 0.75
LIG1-219ENST00000600055 MAP3K15Q6ZN16 1313 aa19.71■□□□□ 0.75
LIG1-219ENST00000600055 FANCIQ9NVI1 1328 aa19.71■□□□□ 0.75
LIG1-219ENST00000600055 AIMP1Q12904 312 aaKnown RBP19.7■□□□□ 0.74
LIG1-219ENST00000600055 XAGE3Q8WTP9 111 aa19.7■□□□□ 0.74
LIG1-219ENST00000600055 SETDB2Q96T68 719 aa19.7■□□□□ 0.74
LIG1-219ENST00000600055 WWC3Q9ULE0 1092 aa19.7■□□□□ 0.74
LIG1-219ENST00000600055 ZNF521Q96K83 1311 aa19.7■□□□□ 0.74
LIG1-219ENST00000600055 ERVV-1B6SEH8 477 aa19.69■□□□□ 0.74
LIG1-219ENST00000600055 COPS6Q7L5N1 327 aa19.69■□□□□ 0.74
LIG1-219ENST00000600055 PELP1Q8IZL8 1130 aaKnown RBP19.69■□□□□ 0.74
LIG1-219ENST00000600055 ZNF652Q9Y2D9 606 aa19.69■□□□□ 0.74
LIG1-219ENST00000600055 A0A0G2JLW4 131 aa19.68■□□□□ 0.74
LIG1-219ENST00000600055 CCDC24Q8N4L8 307 aa19.68■□□□□ 0.74
LIG1-219ENST00000600055 CARMIL3Q8ND23 1372 aa19.68■□□□□ 0.74
LIG1-219ENST00000600055 PXDNLA1KZ92 1463 aa19.67■□□□□ 0.74
LIG1-219ENST00000600055 DPEP1P16444 411 aa19.67■□□□□ 0.74
LIG1-219ENST00000600055 GPR162Q16538 588 aa19.67■□□□□ 0.74
LIG1-219ENST00000600055 DBF4Q9UBU7 674 aaPredicted RBP19.67■□□□□ 0.74
LIG1-219ENST00000600055 NIP7Q9Y221 180 aaKnown RBP eCLIP19.67■□□□□ 0.74
LIG1-219ENST00000600055 DCAF8L1A6NGE4 600 aa19.66■□□□□ 0.74
LIG1-219ENST00000600055 TCERG1O14776 1098 aaKnown RBP19.66■□□□□ 0.74
LIG1-219ENST00000600055 RGL2O15211 777 aa19.66■□□□□ 0.74
LIG1-219ENST00000600055 TGFB2P61812 414 aa19.66■□□□□ 0.74
LIG1-219ENST00000600055 TWISTNBQ3B726 338 aaPredicted RBP19.66■□□□□ 0.74
LIG1-219ENST00000600055 PRR5LQ6MZQ0 368 aa19.66■□□□□ 0.74
LIG1-219ENST00000600055 AFDNP55196 1824 aaKnown RBP19.65■□□□□ 0.74
LIG1-219ENST00000600055 FAM177BA6PVY3 158 aa19.65■□□□□ 0.74
LIG1-219ENST00000600055 YBX3P16989 372 aaKnown RBP eCLIP19.65■□□□□ 0.74
LIG1-219ENST00000600055 EXOSC9Q06265 439 aaKnown RBP19.65■□□□□ 0.74
LIG1-219ENST00000600055 GOLGA2Q08379 1002 aa19.65■□□□□ 0.74
LIG1-219ENST00000600055 NRXN2Q9P2S2 1712 aa19.65■□□□□ 0.74
LIG1-219ENST00000600055 KIF13BQ9NQT8 1826 aa19.65■□□□□ 0.74
LIG1-219ENST00000600055 KCNA3P22001 575 aa19.64■□□□□ 0.73
LIG1-219ENST00000600055 GPTP24298 496 aa19.64■□□□□ 0.73
LIG1-219ENST00000600055 CHRNA5P30532 468 aa19.64■□□□□ 0.73
LIG1-219ENST00000600055 GIGYF2Q6Y7W6 1299 aaKnown RBP19.64■□□□□ 0.73
LIG1-219ENST00000600055 MYH16Q9H6N6 1097 aa19.64■□□□□ 0.73
LIG1-219ENST00000600055 HYPKQ9NX55 129 aa19.64■□□□□ 0.73
LIG1-219ENST00000600055 KIAA1551Q9HCM1 1747 aa19.63■□□□□ 0.73
LIG1-219ENST00000600055 CCDC30Q5VVM6 783 aa19.63■□□□□ 0.73
LIG1-219ENST00000600055 NBPF5PQ86XG9 351 aaPredicted RBP19.63■□□□□ 0.73
LIG1-219ENST00000600055 CNBD1Q8NA66 436 aa19.63■□□□□ 0.73
LIG1-219ENST00000600055 PHAXQ9H814 394 aaKnown RBP19.63■□□□□ 0.73
LIG1-219ENST00000600055 UBN2Q6ZU65 1347 aa19.62■□□□□ 0.73
LIG1-219ENST00000600055 NPHP1O15259 732 aa19.62■□□□□ 0.73
LIG1-219ENST00000600055 ZNF34Q8IZ26 560 aa19.62■□□□□ 0.73
LIG1-219ENST00000600055 N4BP2Q86UW6 1770 aaPredicted RBP19.62■□□□□ 0.73
LIG1-219ENST00000600055 ATP10DQ9P241 1426 aa19.61■□□□□ 0.73
LIG1-219ENST00000600055 VAMP4O75379 141 aa19.61■□□□□ 0.73
LIG1-219ENST00000600055 SUSD4Q5VX71 490 aa19.6■□□□□ 0.73
LIG1-219ENST00000600055 ANKRD13DQ6ZTN6 518 aa19.6■□□□□ 0.73
LIG1-219ENST00000600055 PLBD2Q8NHP8 589 aa19.6■□□□□ 0.73
LIG1-219ENST00000600055 CDCA7LQ96GN5 454 aa19.6■□□□□ 0.73
LIG1-219ENST00000600055 ST5P78524 1137 aa19.59■□□□□ 0.73
LIG1-219ENST00000600055 TPTE2Q6XPS3 522 aa19.59■□□□□ 0.73
LIG1-219ENST00000600055 C2CD5Q86YS7 1000 aa19.59■□□□□ 0.73
LIG1-219ENST00000600055 BRIP1Q9BX63 1249 aa19.59■□□□□ 0.73
LIG1-219ENST00000600055 NUP98P52948 1817 aa19.59■□□□□ 0.73
LIG1-219ENST00000600055 SLFN5Q08AF3 891 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 TCIRG1Q13488 830 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 NUTM1Q86Y26 1132 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 ZNF428Q96B54 188 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 STK31Q9BXU1 1019 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 CHMP4AQ9BY43 222 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 BCS1LQ9Y276 419 aa19.58■□□□□ 0.72
LIG1-219ENST00000600055 E9PSI1 815 aa19.57■□□□□ 0.72
LIG1-219ENST00000600055 G2E3Q7L622 706 aa19.57■□□□□ 0.72
LIG1-219ENST00000600055 PIM2Q9P1W9 311 aa19.57■□□□□ 0.72
LIG1-219ENST00000600055 SLC4A2P04920 1241 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 PDE6BP35913 854 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 ERFEQ4G0M1 354 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 HSP90AB3PQ58FF7 597 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 RIC3Q7Z5B4 369 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 NYXQ9GZU5 481 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 ANKRD31Q8N7Z5 1873 aa19.56■□□□□ 0.72
LIG1-219ENST00000600055 ATP5J2-PTCD1G3V325 749 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 H0YIN7 160 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 NTSR2O95665 410 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 GTF2E1P29083 439 aaPredicted RBP19.55■□□□□ 0.72
LIG1-219ENST00000600055 PARP10Q53GL7 1025 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 NLRP10Q86W26 655 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 ABCC12Q96J65 1359 aa19.55■□□□□ 0.72
LIG1-219ENST00000600055 GRIN3BO60391 1043 aa19.54■□□□□ 0.72
LIG1-219ENST00000600055 DALRD3Q5D0E6 543 aaKnown RBP19.54■□□□□ 0.72
LIG1-219ENST00000600055 PPP1R42Q7Z4L9 355 aa19.54■□□□□ 0.72
LIG1-219ENST00000600055 GOLGB1Q14789 3259 aaKnown RBP19.53■□□□□ 0.72
LIG1-219ENST00000600055 HNRNPUQ00839 825 aaKnown RBP eCLIP19.53■□□□□ 0.72
LIG1-219ENST00000600055 ZNF622Q969S3 477 aaKnown RBP eCLIP19.53■□□□□ 0.723e-7■■□□□ 12.2
LIG1-219ENST00000600055 ISCA1Q9BUE6 129 aa19.53■□□□□ 0.72
LIG1-219ENST00000600055 UTP14AQ9BVJ6 771 aaKnown RBP19.53■□□□□ 0.72
LIG1-219ENST00000600055 IBTKQ9P2D0 1353 aaPredicted RBP19.53■□□□□ 0.72
LIG1-219ENST00000600055 TRMT2AQ8IZ69 625 aaKnown RBP19.52■□□□□ 0.72
LIG1-219ENST00000600055 SYNE4Q8N205 404 aa19.52■□□□□ 0.72
LIG1-219ENST00000600055 MYD88Q99836 296 aa19.52■□□□□ 0.72
LIG1-219ENST00000600055 DDX58O95786 925 aaKnown RBP19.51■□□□□ 0.71
LIG1-219ENST00000600055 SRGNP10124 158 aa19.51■□□□□ 0.71
LIG1-219ENST00000600055 PDZRN3Q9UPQ7 1066 aa19.51■□□□□ 0.71
LIG1-219ENST00000600055 MAP3K2Q9Y2U5 619 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms