RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 TM4SF1P30408 202 aa17.87■□□□□ 0.45
SHKBP1-207ENST00000595631 TBC1D9BQ66K14 1250 aa17.87■□□□□ 0.45
SHKBP1-207ENST00000595631 NLGN2Q8NFZ4 835 aa17.87■□□□□ 0.45
SHKBP1-207ENST00000595631 PARP3Q9Y6F1 533 aa17.87■□□□□ 0.45
SHKBP1-207ENST00000595631 POLRMTO00411 1230 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-207ENST00000595631 BRCA1P38398 1863 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-207ENST00000595631 CACNA1FO60840 1977 aa17.85■□□□□ 0.45
SHKBP1-207ENST00000595631 HLFQ16534 295 aa17.85■□□□□ 0.45
SHKBP1-207ENST00000595631 C10orf71Q711Q0 1435 aa17.85■□□□□ 0.45
SHKBP1-207ENST00000595631 TCERG1O14776 1098 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-207ENST00000595631 EXOSC9Q06265 439 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-207ENST00000595631 ZBTB3Q9H5J0 574 aa17.84■□□□□ 0.45
SHKBP1-207ENST00000595631 DDX21Q9NR30 783 aaKnown RBP eCLIP17.84■□□□□ 0.45
SHKBP1-207ENST00000595631 MAP3K15Q6ZN16 1313 aa17.83■□□□□ 0.44
SHKBP1-207ENST00000595631 AIMP1Q12904 312 aaKnown RBP17.83■□□□□ 0.44
SHKBP1-207ENST00000595631 TWISTNBQ3B726 338 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-207ENST00000595631 KIF6Q6ZMV9 814 aa17.83■□□□□ 0.44
SHKBP1-207ENST00000595631 XAGE3Q8WTP9 111 aa17.83■□□□□ 0.44
SHKBP1-207ENST00000595631 CACNA1SQ13698 1873 aa17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 DLEC1Q9Y238 1755 aa17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 COL11A2P13942 1736 aaPredicted RBP17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 GOLGA2Q08379 1002 aa17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 COPS6Q7L5N1 327 aa17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 CD2APQ9Y5K6 639 aa17.82■□□□□ 0.44
SHKBP1-207ENST00000595631 CARMIL3Q8ND23 1372 aa17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 SERPINB2P05120 415 aa17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 CDCA7LQ96GN5 454 aa17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 DBF4Q9UBU7 674 aaPredicted RBP17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 ZNF652Q9Y2D9 606 aa17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 PXDNLA1KZ92 1463 aa17.81■□□□□ 0.44
SHKBP1-207ENST00000595631 CCDC24Q8N4L8 307 aa17.8■□□□□ 0.44
SHKBP1-207ENST00000595631 MYH16Q9H6N6 1097 aa17.8■□□□□ 0.44
SHKBP1-207ENST00000595631 WWC3Q9ULE0 1092 aa17.8■□□□□ 0.44
SHKBP1-207ENST00000595631 ERVV-1B6SEH8 477 aa17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 CLEC4GQ6UXB4 293 aa17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 SETDB2Q96T68 719 aa17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 PHAXQ9H814 394 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 NIP7Q9Y221 180 aaKnown RBP eCLIP17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 TNRC6CQ9HCJ0 1690 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-207ENST00000595631 FAM177BA6PVY3 158 aa17.78■□□□□ 0.44
SHKBP1-207ENST00000595631 GPTP24298 496 aa17.78■□□□□ 0.44
SHKBP1-207ENST00000595631 SLFN5Q08AF3 891 aa17.78■□□□□ 0.44
SHKBP1-207ENST00000595631 CCDC30Q5VVM6 783 aa17.78■□□□□ 0.44
SHKBP1-207ENST00000595631 ATP10DQ9P241 1426 aa17.78■□□□□ 0.44
SHKBP1-207ENST00000595631 VAMP4O75379 141 aa17.77■□□□□ 0.44
SHKBP1-207ENST00000595631 HNRNPUQ00839 825 aaKnown RBP eCLIP17.77■□□□□ 0.44
SHKBP1-207ENST00000595631 PRR5LQ6MZQ0 368 aa17.77■□□□□ 0.44
SHKBP1-207ENST00000595631 HYPKQ9NX55 129 aa17.77■□□□□ 0.44
SHKBP1-207ENST00000595631 LAMB2P55268 1798 aa17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 UBN2Q6ZU65 1347 aa17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 E9PSI1 815 aa17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 RGL2O15211 777 aa17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 GIGYF2Q6Y7W6 1299 aaKnown RBP17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 PELP1Q8IZL8 1130 aaKnown RBP17.76■□□□□ 0.43
SHKBP1-207ENST00000595631 ARFGEF1Q9Y6D6 1849 aa17.75■□□□□ 0.43
SHKBP1-207ENST00000595631 A0A0G2JLW4 131 aa17.75■□□□□ 0.43
SHKBP1-207ENST00000595631 DPEP1P16444 411 aa17.75■□□□□ 0.43
SHKBP1-207ENST00000595631 G2E3Q7L622 706 aa17.75■□□□□ 0.43
SHKBP1-207ENST00000595631 ZNF428Q96B54 188 aa17.75■□□□□ 0.43
SHKBP1-207ENST00000595631 CHRNA5P30532 468 aa17.74■□□□□ 0.43
SHKBP1-207ENST00000595631 NBPF5PQ86XG9 351 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-207ENST00000595631 ZNF34Q8IZ26 560 aa17.74■□□□□ 0.43
SHKBP1-207ENST00000595631 CNBD1Q8NA66 436 aa17.74■□□□□ 0.43
SHKBP1-207ENST00000595631 STK31Q9BXU1 1019 aa17.74■□□□□ 0.43
SHKBP1-207ENST00000595631 DDX60Q8IY21 1712 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-207ENST00000595631 ANKRD13DQ6ZTN6 518 aa17.73■□□□□ 0.43
SHKBP1-207ENST00000595631 PLBD2Q8NHP8 589 aa17.73■□□□□ 0.43
SHKBP1-207ENST00000595631 CHD4Q14839 1912 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 ABCC12Q96J65 1359 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 NPHP1O15259 732 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 SLC4A2P04920 1241 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 YBX3P16989 372 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 TGFB2P61812 414 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 SUSD4Q5VX71 490 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 NUTM1Q86Y26 1132 aa17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 TRMT2AQ8IZ69 625 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-207ENST00000595631 KCNA3P22001 575 aa17.71■□□□□ 0.43
SHKBP1-207ENST00000595631 GPR162Q16538 588 aa17.71■□□□□ 0.43
SHKBP1-207ENST00000595631 ATP5J2-PTCD1G3V325 749 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 ST5P78524 1137 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 TCIRG1Q13488 830 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 ERFEQ4G0M1 354 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 RIC3Q7Z5B4 369 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 CHMP4AQ9BY43 222 aa17.7■□□□□ 0.42
SHKBP1-207ENST00000595631 ADCY9O60503 1353 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 NTSR2O95665 410 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 HSP90AB3PQ58FF7 597 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 TPTE2Q6XPS3 522 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 NLRP10Q86W26 655 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 C2CD5Q86YS7 1000 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 SLX4Q8IY92 1834 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 TAF1P21675 1872 aa17.69■□□□□ 0.42
SHKBP1-207ENST00000595631 IBTKQ9P2D0 1353 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-207ENST00000595631 MYD88Q99836 296 aa17.68■□□□□ 0.42
SHKBP1-207ENST00000595631 ISCA1Q9BUE6 129 aa17.68■□□□□ 0.42
SHKBP1-207ENST00000595631 BRIP1Q9BX63 1249 aa17.68■□□□□ 0.42
SHKBP1-207ENST00000595631 MAP3K2Q9Y2U5 619 aa17.68■□□□□ 0.42
SHKBP1-207ENST00000595631 DCAF8L1A6NGE4 600 aa17.67■□□□□ 0.42
SHKBP1-207ENST00000595631 GTF2E1P29083 439 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-207ENST00000595631 FLIIQ13045 1269 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms