RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 HOXB7P09629 217 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 VPS53Q5VIR6 699 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 ZSCAN31Q96LW9 406 aaPredicted RBP17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 AMOTL2Q9Y2J4 779 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 DIP2AQ14689 1571 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 RUFY2Q8WXA3 655 aa17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 SPTLC3Q9NUV7 552 aa17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 CASTP20810 708 aaKnown RBP17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 HMGN5P82970 282 aaKnown RBP17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 CHMP4AQ9BY43 222 aa17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 SH2B1Q9NRF2 756 aaPredicted RBP17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 SPG7Q9UQ90 795 aa17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 MTMR6Q9Y217 621 aa17.8■□□□□ 0.44
SMARCA4-219ENST00000592604 LARGE1O95461 756 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 DNAAF4Q8WXU2 420 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 ZNF830Q96NB3 372 aaPredicted RBP17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 SLC26A8Q96RN1 970 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 FIBPO43427 364 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 GTF2F1P35269 517 aaKnown RBP eCLIP17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 MTX1Q13505 466 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 LARP6Q9BRS8 491 aaKnown RBP17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 ZSWIM6Q9HCJ5 1215 aa17.79■□□□□ 0.44
SMARCA4-219ENST00000592604 MED1Q15648 1581 aaPredicted RBP17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 GJB2P29033 226 aa17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 EIF4A1P60842 406 aaKnown RBP17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 DNTTIP2Q5QJE6 756 aaKnown RBP17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 TTC12Q9H892 705 aaPredicted RBP17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 DIAPH3Q9NSV4 1193 aa17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 PDRG1Q9NUG6 133 aa17.78■□□□□ 0.44
SMARCA4-219ENST00000592604 TBX22Q9Y458 520 aa17.77■□□□□ 0.44
SMARCA4-219ENST00000592604 PI4KAP2A4QPH2 592 aa17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 CPA1P15085 419 aa17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 PTH1RQ03431 593 aa17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 DNM1Q05193 864 aaKnown RBP17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 CCDC83Q8IWF9 413 aa17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 PI4KAP1Q8N8J0 262 aa17.77■□□□□ 0.43
SMARCA4-219ENST00000592604 GIMAP6Q6P9H5 292 aa17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 MPNDQ8N594 471 aa17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 KDM3BQ7LBC6 1761 aa17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 EIF2S2P20042 333 aaKnown RBP17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 ADCK5Q3MIX3 580 aa17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 CLASRPQ8N2M8 674 aaKnown RBP17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 JAKMIP1Q96N16 626 aaKnown RBP17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 CYP46A1Q9Y6A2 500 aa17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 CHD2O14647 1828 aaKnown RBP17.76■□□□□ 0.43
SMARCA4-219ENST00000592604 NECTIN1Q15223 517 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 ECHDC1Q9NTX5 307 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 CHPF2Q9P2E5 772 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 ANKARQ7Z5J8 1434 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 TPM3P06753 285 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 ST3GAL1Q11201 340 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 PRPF40BQ6NWY9 871 aaKnown RBP17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 EID1Q9Y6B2 187 aa17.75■□□□□ 0.43
SMARCA4-219ENST00000592604 ADCY9O60503 1353 aa17.74■□□□□ 0.43
SMARCA4-219ENST00000592604 AP5Z1O43299 807 aa17.74■□□□□ 0.43
SMARCA4-219ENST00000592604 PRDM4Q9UKN5 801 aa17.74■□□□□ 0.43
SMARCA4-219ENST00000592604 OS9Q13438 667 aaPredicted RBP17.73■□□□□ 0.43
SMARCA4-219ENST00000592604 ME3Q16798 604 aa17.73■□□□□ 0.43
SMARCA4-219ENST00000592604 EVI5LQ96CN4 794 aa17.73■□□□□ 0.43
SMARCA4-219ENST00000592604 LTV1Q96GA3 475 aaPredicted RBP17.73■□□□□ 0.43
SMARCA4-219ENST00000592604 KIAA1524Q8TCG1 905 aa17.73■□□□□ 0.43
SMARCA4-219ENST00000592604 ERC1Q8IUD2 1116 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 GPATCH3Q96I76 525 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 CCDC171Q6TFL3 1326 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 CCDC192P0DO97 292 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 CCDC94Q9BW85 323 aaPredicted RBP17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 SLIT1O75093 1534 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 ARHGAP23Q9P227 1491 aa17.72■□□□□ 0.43
SMARCA4-219ENST00000592604 ALDH1L1O75891 902 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 ZKSCAN1P17029 563 aaPredicted RBP17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 TPRNQ4KMQ1 711 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 SMAP1Q8IYB5 467 aaPredicted RBP17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 C17orf53Q8N3J3 647 aaPredicted RBP17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 LGR6Q9HBX8 967 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 SNRKQ9NRH2 765 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 ELP1O95163 1332 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 NUTM2GQ5VZR2 741 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 USHBP1Q8N6Y0 703 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 ABTB2Q8N961 1025 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 MAP4K1Q92918 833 aa17.71■□□□□ 0.43
SMARCA4-219ENST00000592604 CREB3L3Q68CJ9 461 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 ZNF710Q8N1W2 664 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 KCNF1Q9H3M0 494 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 HDAC5Q9UQL6 1122 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 VPS37CA5D8V6 355 aaPredicted RBP17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 HIP1O00291 1037 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 IFIT2P09913 472 aaKnown RBP17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 TPCN1Q9ULQ1 816 aa17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 RBM8AQ9Y5S9 174 aaKnown RBP17.7■□□□□ 0.42
SMARCA4-219ENST00000592604 KCNQ3O43525 872 aa17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 KRT85P78386 507 aa17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 LARP1BQ659C4 914 aaKnown RBP17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 TTC6Q86TZ1 520 aa17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 GTF2E1P29083 439 aaPredicted RBP17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 IP6K1Q92551 441 aa17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 ALDH8A1Q9H2A2 487 aaPredicted RBP17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 DBF4Q9UBU7 674 aaPredicted RBP17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 KIF3AQ9Y496 699 aa17.69■□□□□ 0.42
SMARCA4-219ENST00000592604 LTN1O94822 1766 aa17.68■□□□□ 0.42
SMARCA4-219ENST00000592604 GOLGA6L6A8MZA4 724 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms