RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ZKSCAN2Q63HK3 967 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 COL23A1Q86Y22 540 aaPredicted RBP13.36□□□□□ -0.27
VPS4B-204ENST00000589604 AK7Q96M32 723 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 TFCP2L1Q9NZI6 479 aa13.36□□□□□ -0.27
VPS4B-204ENST00000589604 RPS6KA4O75676 772 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 PHF14O94880 888 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 STARD3NLO95772 234 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 ANXA1P04083 346 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 EIF2S2P20042 333 aaKnown RBP13.35□□□□□ -0.27
VPS4B-204ENST00000589604 LRP10Q7Z4F1 713 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 TEX13AQ9BXU3 409 aaPredicted RBP13.35□□□□□ -0.27
VPS4B-204ENST00000589604 KIF16BQ96L93 1317 aa13.35□□□□□ -0.27
VPS4B-204ENST00000589604 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.34□□□□□ -0.27
VPS4B-204ENST00000589604 ATF7IPQ6VMQ6 1270 aa13.34□□□□□ -0.27
VPS4B-204ENST00000589604 ARHGAP45Q92619 1136 aa13.34□□□□□ -0.27
VPS4B-204ENST00000589604 HOXD11P31277 338 aaPredicted RBP13.34□□□□□ -0.27
VPS4B-204ENST00000589604 EIF5P55010 431 aaKnown RBP13.34□□□□□ -0.27
VPS4B-204ENST00000589604 ARHGEF1Q92888 912 aaKnown RBP13.34□□□□□ -0.27
VPS4B-204ENST00000589604 HOXB7P09629 217 aa13.33□□□□□ -0.28
VPS4B-204ENST00000589604 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
VPS4B-204ENST00000589604 CLUAP1Q96AJ1 413 aa13.33□□□□□ -0.28
VPS4B-204ENST00000589604 COG6Q9Y2V7 657 aa13.33□□□□□ -0.28
VPS4B-204ENST00000589604 RTCBQ9Y3I0 505 aaKnown RBP13.33□□□□□ -0.28
VPS4B-204ENST00000589604 IPO8O15397 1037 aaKnown RBP13.32□□□□□ -0.28
VPS4B-204ENST00000589604 SSFA2P28290 1259 aa13.32□□□□□ -0.28
VPS4B-204ENST00000589604 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
VPS4B-204ENST00000589604 B4GALNT3Q6L9W6 998 aa13.32□□□□□ -0.28
VPS4B-204ENST00000589604 CHPF2Q9P2E5 772 aa13.32□□□□□ -0.28
VPS4B-204ENST00000589604 SRP68Q9UHB9 627 aaKnown RBP13.32□□□□□ -0.28
VPS4B-204ENST00000589604 COL15A1P39059 1388 aa13.32□□□□□ -0.28
VPS4B-204ENST00000589604 MYL6BP14649 208 aa13.31□□□□□ -0.28
VPS4B-204ENST00000589604 VASPP50552 380 aaPredicted RBP13.31□□□□□ -0.28
VPS4B-204ENST00000589604 PAXIP1Q6ZW49 1069 aaPredicted RBP13.31□□□□□ -0.28
VPS4B-204ENST00000589604 G2E3Q7L622 706 aa13.31□□□□□ -0.28
VPS4B-204ENST00000589604 IL6STP40189 918 aaPredicted RBP13.31□□□□□ -0.28
VPS4B-204ENST00000589604 CCDC30Q5VVM6 783 aa13.31□□□□□ -0.28
VPS4B-204ENST00000589604 ZNF330Q9Y3S2 320 aaPredicted RBP13.31□□□□□ -0.28
VPS4B-204ENST00000589604 ABCC4O15439 1325 aa13.3□□□□□ -0.28
VPS4B-204ENST00000589604 TRAPPC3LQ5T215 181 aa13.3□□□□□ -0.28
VPS4B-204ENST00000589604 TTLL7Q6ZT98 887 aa13.3□□□□□ -0.28
VPS4B-204ENST00000589604 BCL2L12Q9HB09 334 aa13.3□□□□□ -0.28
VPS4B-204ENST00000589604 TBC1D2BQ9UPU7 963 aa13.3□□□□□ -0.28
VPS4B-204ENST00000589604 N4BP2Q86UW6 1770 aaPredicted RBP13.29□□□□□ -0.28
VPS4B-204ENST00000589604 ZBTB7AO95365 584 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 MS4A1P11836 297 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 MVPQ14764 893 aaKnown RBP13.29□□□□□ -0.28
VPS4B-204ENST00000589604 TMEM57Q8N5G2 664 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 DDX21Q9NR30 783 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS4B-204ENST00000589604 ERBB4Q15303 1308 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 BCORQ6W2J9 1755 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 SCN7AQ01118 1682 aa13.29□□□□□ -0.28
VPS4B-204ENST00000589604 COL24A1Q17RW2 1714 aa13.28□□□□□ -0.28
VPS4B-204ENST00000589604 MSL1Q68DK7 614 aa13.28□□□□□ -0.28
VPS4B-204ENST00000589604 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
VPS4B-204ENST00000589604 PHAXQ9H814 394 aaKnown RBP13.28□□□□□ -0.28
VPS4B-204ENST00000589604 ATF5Q9Y2D1 282 aaPredicted RBP13.28□□□□□ -0.28
VPS4B-204ENST00000589604 USP42Q9H9J4 1324 aaKnown RBP13.28□□□□□ -0.28
VPS4B-204ENST00000589604 GYS1P13807 737 aa13.28□□□□□ -0.28
VPS4B-204ENST00000589604 API5Q9BZZ5 524 aaKnown RBP13.28□□□□□ -0.28
VPS4B-204ENST00000589604 PTPRCP08575 1304 aa13.27□□□□□ -0.28
VPS4B-204ENST00000589604 CAMTA2O94983 1202 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 RFC4P35249 363 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 USPL1Q5W0Q7 1092 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 FTSJ3Q8IY81 847 aaKnown RBP13.27□□□□□ -0.29
VPS4B-204ENST00000589604 FLAD1Q8NFF5 587 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 XAGE3Q8WTP9 111 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 CCDC136Q96JN2 1154 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 DBF4Q9UBU7 674 aaPredicted RBP13.27□□□□□ -0.29
VPS4B-204ENST00000589604 NARFQ9UHQ1 456 aa13.27□□□□□ -0.29
VPS4B-204ENST00000589604 HMGB2P26583 209 aaKnown RBP13.26□□□□□ -0.29
VPS4B-204ENST00000589604 HLFQ16534 295 aa13.26□□□□□ -0.29
VPS4B-204ENST00000589604 COPS6Q7L5N1 327 aa13.26□□□□□ -0.29
VPS4B-204ENST00000589604 DZIP3Q86Y13 1208 aaKnown RBP13.26□□□□□ -0.29
VPS4B-204ENST00000589604 STK31Q9BXU1 1019 aa13.26□□□□□ -0.29
VPS4B-204ENST00000589604 AIMP1Q12904 312 aaKnown RBP13.25□□□□□ -0.29
VPS4B-204ENST00000589604 FLIIQ13045 1269 aa13.25□□□□□ -0.29
VPS4B-204ENST00000589604 SGIP1Q9BQI5 828 aa13.25□□□□□ -0.29
VPS4B-204ENST00000589604 PTGER2P43116 358 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 AAMPQ13685 434 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 TMEM132AQ24JP5 1023 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 INTS3Q68E01 1043 aaKnown RBP13.24□□□□□ -0.29
VPS4B-204ENST00000589604 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 ZBTB7BO15156 539 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-204ENST00000589604 ITPRIPQ8IWB1 547 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 CHMP4AQ9BY43 222 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 ZBTB40Q9NUA8 1239 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 HYPKQ9NX55 129 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 DDX19BQ9UMR2 479 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 PCDHB15Q9Y5E8 787 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 NUP98P52948 1817 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 KDM2BQ8NHM5 1336 aa13.24□□□□□ -0.29
VPS4B-204ENST00000589604 A0A087WZG4 1122 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 F6X3S4 739 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 SLC16A10Q8TF71 515 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 MTFR1LQ9H019 292 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 MAP3K15Q6ZN16 1313 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 ARFGEF2Q9Y6D5 1785 aa13.23□□□□□ -0.29
VPS4B-204ENST00000589604 ZPR1O75312 459 aa13.22□□□□□ -0.29
VPS4B-204ENST00000589604 DDR1Q08345 913 aa13.22□□□□□ -0.29
VPS4B-204ENST00000589604 TBC1D9BQ66K14 1250 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms