RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PIK3C2AO00443 1686 aa9.07□□□□□ -0.96
ZNF540-206ENST00000589117 GOLGA6L3A6NEY3 463 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 F6X3S4 739 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 ERC2O15083 957 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 SDSP20132 328 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 SSTR3P32745 418 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-206ENST00000589117 AMOTQ4VCS5 1084 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 BEGAINQ9BUH8 593 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 USP26Q9BXU7 913 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 CEP170BQ9Y4F5 1589 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-206ENST00000589117 MCCP23508 829 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 ATP8B2P98198 1209 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 ESCO1Q5FWF5 840 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 HDGFL1Q5TGJ6 251 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 G2E3Q7L622 706 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 C16orf71Q8IYS4 520 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-206ENST00000589117 IL17REQ8NFR9 667 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 KIF2CQ99661 725 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 CWC22Q9HCG8 908 aaKnown RBP9.06□□□□□ -0.96
ZNF540-206ENST00000589117 SNRKQ9NRH2 765 aa9.06□□□□□ -0.96
ZNF540-206ENST00000589117 UBTFL1P0CB47 393 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-206ENST00000589117 DDIT3P35638 169 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 PDE1AP54750 535 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 TEFQ10587 303 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 PLEKHO1Q53GL0 409 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-206ENST00000589117 RETREG2Q8NC44 543 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 RAB11FIP3O75154 756 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 NUCB2P80303 420 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 RAB3GAP1Q15042 981 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 SKIV2LQ15477 1246 aaKnown RBP9.05□□□□□ -0.96
ZNF540-206ENST00000589117 GPCPD1Q9NPB8 672 aa9.05□□□□□ -0.96
ZNF540-206ENST00000589117 RGPD8O14715 1765 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-206ENST00000589117 SMARCA5O60264 1052 aaPredicted RBP9.04□□□□□ -0.96
ZNF540-206ENST00000589117 MCM2P49736 904 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 TSR1Q2NL82 804 aaKnown RBP9.04□□□□□ -0.96
ZNF540-206ENST00000589117 HSP90AB4PQ58FF6 505 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 ADGRL3Q9HAR2 1447 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 IRX5P78411 483 aaPredicted RBP9.04□□□□□ -0.96
ZNF540-206ENST00000589117 AKAP4Q5JQC9 854 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 C1orf141Q5JVX7 400 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 TNPO1Q92973 898 aaKnown RBP9.04□□□□□ -0.96
ZNF540-206ENST00000589117 PLSCR2Q9NRY7 297 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 USP54Q70EL1 1684 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 PXDNLA1KZ92 1463 aa9.04□□□□□ -0.96
ZNF540-206ENST00000589117 MX1P20591 662 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 CACNA1FO60840 1977 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 ATN1P54259 1190 aaPredicted RBP9.03□□□□□ -0.96
ZNF540-206ENST00000589117 IRF5Q13568 498 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.03□□□□□ -0.96
ZNF540-206ENST00000589117 BRPF3Q9ULD4 1205 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 EXOC6BQ9Y2D4 811 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 CEMIPQ8WUJ3 1361 aa9.03□□□□□ -0.96
ZNF540-206ENST00000589117 AOX1Q06278 1338 aa9.02□□□□□ -0.96
ZNF540-206ENST00000589117 BTBD11A6QL63 1104 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 EPB41L2O43491 1005 aaKnown RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 CLCN1P35523 988 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 MRE11P49959 708 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 CCDC97Q96F63 343 aaPredicted RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 TRAIPQ9BWF2 469 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 IBTKQ9P2D0 1353 aaPredicted RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 EIF2S2P20042 333 aaKnown RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 MYSM1Q5VVJ2 828 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 NBPF6Q5VWK0 638 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 ZNF530Q6P9A1 599 aaPredicted RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 OTUD7AQ8TE49 926 aaPredicted RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 RBM33Q96EV2 1170 aaKnown RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 NBPF4Q96M43 638 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 USP44Q9H0E7 712 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 GZF1Q9H116 711 aaPredicted RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 STAP2Q9UGK3 403 aa9.02□□□□□ -0.97
ZNF540-206ENST00000589117 LRRFIP2Q9Y608 721 aaKnown RBP9.02□□□□□ -0.97
ZNF540-206ENST00000589117 LRRC37A3O60309 1634 aa9.01□□□□□ -0.97
ZNF540-206ENST00000589117 GCP02774 474 aa9.01□□□□□ -0.97
ZNF540-206ENST00000589117 ANAPC15P60006 121 aa9.01□□□□□ -0.97
ZNF540-206ENST00000589117 EIF4A1P60842 406 aaKnown RBP9.01□□□□□ -0.97
ZNF540-206ENST00000589117 CLEC17AQ6ZS10 378 aa9.01□□□□□ -0.97
ZNF540-206ENST00000589117 USHBP1Q8N6Y0 703 aa9.01□□□□□ -0.97
ZNF540-206ENST00000589117 DBF4Q9UBU7 674 aaPredicted RBP9.01□□□□□ -0.97
ZNF540-206ENST00000589117 SSH3Q8TE77 659 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 RILPL2Q969X0 211 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 KIF1BPQ96EK5 621 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 FAM217BQ9NTX9 383 aaPredicted RBP9□□□□□ -0.97
ZNF540-206ENST00000589117 CHD2O14647 1828 aaKnown RBP9□□□□□ -0.97
ZNF540-206ENST00000589117 NWD1Q149M9 1564 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 PNMA6EA0A0J9YXQ4 647 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 DNAAF4Q8WXU2 420 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 NCAPD2Q15021 1401 aa9□□□□□ -0.97
ZNF540-206ENST00000589117 FSD2A1L4K1 749 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 SURF6O75683 361 aaKnown RBP8.99□□□□□ -0.97
ZNF540-206ENST00000589117 CD2BP2O95400 341 aaKnown RBP8.99□□□□□ -0.97
ZNF540-206ENST00000589117 ESYT1Q9BSJ8 1104 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 SRGAP3O43295 1099 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 RAD21O60216 631 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 DDX58O95786 925 aaKnown RBP8.99□□□□□ -0.97
ZNF540-206ENST00000589117 EN1Q05925 392 aaPredicted RBP8.99□□□□□ -0.97
ZNF540-206ENST00000589117 ARHGEF25Q86VW2 580 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 FAM43AQ8N2R8 423 aa8.99□□□□□ -0.97
ZNF540-206ENST00000589117 PHAXQ9H814 394 aaKnown RBP8.99□□□□□ -0.97
ZNF540-206ENST00000589117 SERPINA10Q9UK55 444 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms