RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CSRNP1Q96S65 589 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.49□□□□□ -0.57
VMP1-208ENST00000588617 CABP1Q9NZU7 370 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 EMILIN1Q9Y6C2 1016 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 ADH1CP00326 375 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 PCSK2P16519 638 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 ATP2B1P20020 1258 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 GGCXP38435 758 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 RPIAP49247 311 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 GNL2Q13823 731 aaKnown RBP11.48□□□□□ -0.57
VMP1-208ENST00000588617 TEAD4Q15561 434 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 RTN1Q16799 776 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 DNAJC2Q99543 621 aaKnown RBP11.48□□□□□ -0.57
VMP1-208ENST00000588617 ESYT1Q9BSJ8 1104 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 KLK14Q9P0G3 267 aa11.48□□□□□ -0.57
VMP1-208ENST00000588617 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.48□□□□□ -0.57
VMP1-208ENST00000588617 CD2BP2O95400 341 aaKnown RBP11.47□□□□□ -0.57
VMP1-208ENST00000588617 FBF1Q8TES7 1133 aa11.47□□□□□ -0.57
VMP1-208ENST00000588617 ZDHHC1Q8WTX9 485 aa11.47□□□□□ -0.57
VMP1-208ENST00000588617 CADPSQ9ULU8 1353 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 HIRAP54198 1017 aaPredicted RBP11.46□□□□□ -0.57
VMP1-208ENST00000588617 TTC16Q8NEE8 873 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 DHX38Q92620 1227 aaKnown RBP11.46□□□□□ -0.57
VMP1-208ENST00000588617 L3MBTL2Q969R5 705 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 FRMD6Q96NE9 622 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 CFHR5Q9BXR6 569 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 NLRP2Q9NX02 1062 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 PARP3Q9Y6F1 533 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 AK5Q9Y6K8 562 aa11.46□□□□□ -0.57
VMP1-208ENST00000588617 TNNI2P48788 182 aa11.45□□□□□ -0.58
VMP1-208ENST00000588617 ORC1Q13415 861 aa11.45□□□□□ -0.58
VMP1-208ENST00000588617 GPR152Q8TDT2 470 aa11.45□□□□□ -0.58
VMP1-208ENST00000588617 EIF1AYO14602 144 aaKnown RBP11.44□□□□□ -0.58
VMP1-208ENST00000588617 PPM1GO15355 546 aaPredicted RBP11.44□□□□□ -0.58
VMP1-208ENST00000588617 SIAH2O43255 324 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 NEFLP07196 543 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 NR3C2P08235 984 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 GTF2F1P35269 517 aaKnown RBP eCLIP11.44□□□□□ -0.58
VMP1-208ENST00000588617 C8orf34Q49A92 452 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 CRELD1Q96HD1 420 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 PHACTR1Q9C0D0 580 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 HRH3Q9Y5N1 445 aa11.44□□□□□ -0.58
VMP1-208ENST00000588617 DNAJA1P31689 397 aaKnown RBP11.43□□□□□ -0.58
VMP1-208ENST00000588617 CENPCQ03188 943 aa11.43□□□□□ -0.58
VMP1-208ENST00000588617 GIMAP6Q6P9H5 292 aa11.43□□□□□ -0.58
VMP1-208ENST00000588617 NUDT16Q96DE0 195 aaKnown RBP11.43□□□□□ -0.58
VMP1-208ENST00000588617 SPG7Q9UQ90 795 aa11.43□□□□□ -0.58
VMP1-208ENST00000588617 ADH1AP07327 375 aa11.42□□□□□ -0.58
VMP1-208ENST00000588617 CTSHP09668 335 aa11.42□□□□□ -0.58
VMP1-208ENST00000588617 CLN3Q13286 438 aa11.42□□□□□ -0.58
VMP1-208ENST00000588617 TREML1Q86YW5 311 aa11.42□□□□□ -0.58
VMP1-208ENST00000588617 LNPKQ9C0E8 428 aa11.42□□□□□ -0.58
VMP1-208ENST00000588617 EIF4BP23588 611 aaKnown RBP11.41□□□□□ -0.58
VMP1-208ENST00000588617 GGNBP2Q9H3C7 697 aa11.41□□□□□ -0.58
VMP1-208ENST00000588617 CUEDC1Q9NWM3 386 aaPredicted RBP11.41□□□□□ -0.58
VMP1-208ENST00000588617 INPP5FQ9Y2H2 1132 aa11.41□□□□□ -0.58
VMP1-208ENST00000588617 NLRP3Q96P20 1036 aa11.4□□□□□ -0.58
VMP1-208ENST00000588617 FHDC1Q9C0D6 1143 aaPredicted RBP11.4□□□□□ -0.58
VMP1-208ENST00000588617 DNAJC25Q9H1X3 360 aa11.4□□□□□ -0.58
VMP1-208ENST00000588617 V9GY48 417 aaPredicted RBP11.4□□□□□ -0.58
VMP1-208ENST00000588617 A6NHS1 94 aa11.39□□□□□ -0.59
VMP1-208ENST00000588617 MEN1O00255 615 aa11.39□□□□□ -0.59
VMP1-208ENST00000588617 ZNF394Q53GI3 561 aa11.39□□□□□ -0.59
VMP1-208ENST00000588617 ZNF654Q8IZM8 581 aa11.39□□□□□ -0.59
VMP1-208ENST00000588617 NIFKQ9BYG3 293 aaKnown RBP11.39□□□□□ -0.59
VMP1-208ENST00000588617 FAM13BQ9NYF5 915 aa11.39□□□□□ -0.59
VMP1-208ENST00000588617 DDX41Q9UJV9 622 aaKnown RBP11.39□□□□□ -0.59
VMP1-208ENST00000588617 CPNE3O75131 537 aaKnown RBP11.38□□□□□ -0.59
VMP1-208ENST00000588617 RPLP1P05386 114 aaKnown RBP11.38□□□□□ -0.59
VMP1-208ENST00000588617 ARID5AQ03989 594 aa11.38□□□□□ -0.59
VMP1-208ENST00000588617 NOP9Q86U38 636 aaKnown RBP11.38□□□□□ -0.59
VMP1-208ENST00000588617 PPARGC1BQ86YN6 1023 aaKnown RBP11.38□□□□□ -0.59
VMP1-208ENST00000588617 ZNF295-AS1Q8N0V1 137 aa11.38□□□□□ -0.59
VMP1-208ENST00000588617 KDF1Q8NAX2 398 aaPredicted RBP11.38□□□□□ -0.59
VMP1-208ENST00000588617 GMLQ99445 158 aa11.38□□□□□ -0.59
VMP1-208ENST00000588617 PCDHGB7Q9Y5F8 929 aa11.38□□□□□ -0.59
VMP1-208ENST00000588617 OPLAHO14841 1288 aa11.37□□□□□ -0.59
VMP1-208ENST00000588617 CBLBQ13191 982 aa11.37□□□□□ -0.59
VMP1-208ENST00000588617 C1orf53Q5VUE5 145 aa11.37□□□□□ -0.59
VMP1-208ENST00000588617 USP48Q86UV5 1035 aa11.37□□□□□ -0.59
VMP1-208ENST00000588617 ARMC5Q96C12 935 aa11.37□□□□□ -0.59
VMP1-208ENST00000588617 ZSCAN10Q96SZ4 725 aaPredicted RBP11.37□□□□□ -0.59
VMP1-208ENST00000588617 NCLP19338 710 aaKnown RBP11.36□□□□□ -0.59
VMP1-208ENST00000588617 GTF2E1P29083 439 aaPredicted RBP11.36□□□□□ -0.59
VMP1-208ENST00000588617 PTGIRP43119 386 aa11.36□□□□□ -0.59
VMP1-208ENST00000588617 RACK1P63244 317 aaKnown RBP11.36□□□□□ -0.59
VMP1-208ENST00000588617 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.36□□□□□ -0.59
VMP1-208ENST00000588617 TMEM214Q6NUQ4 689 aaKnown RBP11.36□□□□□ -0.59
VMP1-208ENST00000588617 HS2ST1Q7LGA3 356 aa11.35□□□□□ -0.59
VMP1-208ENST00000588617 MICAL2O94851 1124 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 TXLNAP40222 546 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 CCDC144BQ3MJ40 725 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 VPS37DQ86XT2 251 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 PMFBP1Q8TBY8 1022 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 EMID1Q96A84 441 aaPredicted RBP11.34□□□□□ -0.59
VMP1-208ENST00000588617 MRGPRX2Q96LB1 330 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 GGT7Q9UJ14 662 aa11.34□□□□□ -0.59
VMP1-208ENST00000588617 ANKRD62A6NC57 917 aa11.33□□□□□ -0.6
VMP1-208ENST00000588617 WNT7AO00755 349 aa11.33□□□□□ -0.6
VMP1-208ENST00000588617 LIAT1Q6ZQX7 453 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms