RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 POLKQ9UBT6 870 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 EMILIN1Q9Y6C2 1016 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 LTN1O94822 1766 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 PNPLA6Q8IY17 1366 aa7.08□□□□□ -1.28
LIG3-210ENST00000588109 NFAT5O94916 1531 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 CDK12Q9NYV4 1490 aaPredicted RBP7.07□□□□□ -1.28
LIG3-210ENST00000588109 C6orf229H3BNL8 230 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 NDUFV2P19404 249 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 ZC3H6P61129 1189 aaKnown RBP7.07□□□□□ -1.28
LIG3-210ENST00000588109 RIC3Q7Z5B4 369 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 FAM9BQ8IZU0 186 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 SALL2Q9Y467 1007 aaPredicted RBP7.07□□□□□ -1.28
LIG3-210ENST00000588109 SMG6Q86US8 1419 aaKnown RBP7.07□□□□□ -1.28
LIG3-210ENST00000588109 FLT4P35916 1363 aa7.07□□□□□ -1.28
LIG3-210ENST00000588109 COL22A1Q8NFW1 1626 aaPredicted RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 NUTM2BA6NNL0 878 aaPredicted RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 NUTM2EB1AL46 878 aaPredicted RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 U2SURPO15042 1029 aaKnown RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 DIAPH1O60610 1272 aaKnown RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 ADH1BP00325 375 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 HSPA1LP34931 641 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 NUTM2AQ8IVF1 878 aaPredicted RBP7.06□□□□□ -1.28
LIG3-210ENST00000588109 SLC6A16Q9GZN6 736 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 PRDM11Q9NQV5 511 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 NUDCQ9Y266 331 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 ABCA3Q99758 1704 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 CRYBG1Q9Y4K1 1723 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 RTL1A6NKG5 1358 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 KIF24Q5T7B8 1368 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 KIAA0232Q92628 1395 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 JCADQ9P266 1359 aa7.06□□□□□ -1.28
LIG3-210ENST00000588109 PEAK1Q9H792 1746 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 TLL1O43897 1013 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 HOXC9P31274 260 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 GJA5P36382 358 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 GUCA2AQ02747 115 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 HSP90AB2PQ58FF8 381 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 BRICD5Q6PL45 260 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 ARHGEF25Q86VW2 580 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 PNISRQ8TF01 805 aaKnown RBP7.05□□□□□ -1.28
LIG3-210ENST00000588109 HLA-CQ95604 372 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 LTV1Q96GA3 475 aaPredicted RBP7.05□□□□□ -1.28
LIG3-210ENST00000588109 USB1Q9BQ65 265 aaKnown RBP7.05□□□□□ -1.28
LIG3-210ENST00000588109 POLR3EQ9NVU0 708 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 SHPRHQ149N8 1683 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 CPDO75976 1380 aa7.05□□□□□ -1.28
LIG3-210ENST00000588109 COL3A1P02461 1466 aaPredicted RBP7.04□□□□□ -1.28
LIG3-210ENST00000588109 ADAMTS2O95450 1211 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 U2AF1L5P0DN76 240 aaPredicted RBP7.04□□□□□ -1.28
LIG3-210ENST00000588109 U2AF1Q01081 240 aaKnown RBP eCLIP7.04□□□□□ -1.28
LIG3-210ENST00000588109 CHRNA2Q15822 529 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 CSPP1Q1MSJ5 1256 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 MYSM1Q5VVJ2 828 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 IP6K1Q92551 441 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 YTHDC1Q96MU7 727 aaKnown RBP7.04□□□□□ -1.28
LIG3-210ENST00000588109 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.04□□□□□ -1.28
LIG3-210ENST00000588109 INSRP06213 1382 aa7.04□□□□□ -1.28
LIG3-210ENST00000588109 BLMP54132 1417 aaPredicted RBP7.03□□□□□ -1.28
LIG3-210ENST00000588109 A0A0G2JS52 829 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 SPDYE5A6NIY4 337 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 SPTLC1O15269 473 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 CSB-PGBD3P0DP91 1061 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 EIF4A2Q14240 407 aaKnown RBP7.03□□□□□ -1.28
LIG3-210ENST00000588109 SKIV2LQ15477 1246 aaKnown RBP7.03□□□□□ -1.28
LIG3-210ENST00000588109 PPP1R18Q6NYC8 613 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 RSBN1LQ6PCB5 846 aaPredicted RBP7.03□□□□□ -1.28
LIG3-210ENST00000588109 RNF19BQ6ZMZ0 732 aa7.03□□□□□ -1.28
LIG3-210ENST00000588109 SPATA31A6Q5VVP1 1343 aa7.02□□□□□ -1.28
LIG3-210ENST00000588109 ABCC6O95255 1503 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 S1PR4O95977 384 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 NEFMP07197 916 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 IL13P35225 146 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 CLK2P49760 499 aaKnown RBP7.02□□□□□ -1.29
LIG3-210ENST00000588109 EVA1CP58658 441 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 MTMR2Q13614 643 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 MEX3CQ5U5Q3 659 aaKnown RBP7.02□□□□□ -1.29
LIG3-210ENST00000588109 RETREG3Q86VR2 466 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 ANKRD24Q8TF21 1146 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 FBXO41Q8TF61 875 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 SYMPKQ92797 1274 aaKnown RBP7.02□□□□□ -1.29
LIG3-210ENST00000588109 THAP11Q96EK4 314 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 PNNQ9H307 717 aaKnown RBP7.02□□□□□ -1.29
LIG3-210ENST00000588109 ZBTB3Q9H5J0 574 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 ADAMTS8Q9UP79 889 aa7.02□□□□□ -1.29
LIG3-210ENST00000588109 COL14A1Q05707 1796 aaKnown RBP7.02□□□□□ -1.29
LIG3-210ENST00000588109 RGPD5Q99666 1765 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 FAM83GA6ND36 823 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 HMOX1P09601 288 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 CCDC146Q8IYE0 955 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 PCMTD1Q96MG8 357 aaPredicted RBP7.01□□□□□ -1.29
LIG3-210ENST00000588109 STRN4Q9NRL3 753 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 BTG4Q9NY30 223 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 PCDHGC3Q9UN70 934 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 MAPK8IP3Q9UPT6 1336 aa7.01□□□□□ -1.29
LIG3-210ENST00000588109 COL18A1P39060 1754 aa7□□□□□ -1.29
LIG3-210ENST00000588109 HNRNPUQ00839 825 aaKnown RBP eCLIP7□□□□□ -1.29
LIG3-210ENST00000588109 SH3D19Q5HYK7 790 aa7□□□□□ -1.29
LIG3-210ENST00000588109 PRPF38BQ5VTL8 546 aaKnown RBP7□□□□□ -1.29
LIG3-210ENST00000588109 SULT6B1Q6IMI4 303 aa7□□□□□ -1.29
LIG3-210ENST00000588109 TOM1L2Q6ZVM7 507 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms