RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CFHR5Q9BXR6 569 aa12.19□□□□□ -0.46
SS18-214ENST00000580003 PCDHGC4Q9Y5F7 938 aa12.19□□□□□ -0.46
SS18-214ENST00000580003 ATXN7O15265 892 aaPredicted RBP12.18□□□□□ -0.46
SS18-214ENST00000580003 C7orf43Q8WVR3 580 aa12.18□□□□□ -0.46
SS18-214ENST00000580003 SLAIN2Q9P270 581 aa12.18□□□□□ -0.46
SS18-214ENST00000580003 PTCD1O75127 700 aaKnown RBP12.17□□□□□ -0.46
SS18-214ENST00000580003 UBAP2LQ14157 1087 aaKnown RBP12.17□□□□□ -0.46
SS18-214ENST00000580003 RETREG2Q8NC44 543 aa12.17□□□□□ -0.46
SS18-214ENST00000580003 CNTNAP3BQ96NU0 1288 aa12.17□□□□□ -0.46
SS18-214ENST00000580003 MKNK1Q9BUB5 465 aa12.17□□□□□ -0.46
SS18-214ENST00000580003 CNTNAP3Q9BZ76 1288 aa12.17□□□□□ -0.46
SS18-214ENST00000580003 ATXN7L1Q9ULK2 861 aaPredicted RBP12.17□□□□□ -0.46
SS18-214ENST00000580003 SAMD5Q5TGI4 173 aa12.16□□□□□ -0.46
SS18-214ENST00000580003 ABHD17AQ96GS6 310 aa12.16□□□□□ -0.46
SS18-214ENST00000580003 SUSD3Q96L08 255 aa12.16□□□□□ -0.46
SS18-214ENST00000580003 CARNS1A5YM72 827 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 WIPF1O43516 503 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 BNIP3LO60238 219 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 RNFT1Q5M7Z0 435 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 COL26A1Q96A83 441 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 HSH2DQ96JZ2 352 aa12.15□□□□□ -0.46
SS18-214ENST00000580003 KHNYNO15037 678 aaKnown RBP12.14□□□□□ -0.47
SS18-214ENST00000580003 GAS6Q14393 721 aa12.14□□□□□ -0.47
SS18-214ENST00000580003 MYO19Q96H55 970 aa12.14□□□□□ -0.47
SS18-214ENST00000580003 QTRT2Q9H974 415 aaKnown RBP12.14□□□□□ -0.47
SS18-214ENST00000580003 DCDC2BA2VCK2 349 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 FAM157BP0CG42 384 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 MX2P20592 715 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 KRT76Q01546 638 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 B4GALNT3Q6L9W6 998 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 MBIPQ9NS73 344 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 NDFIP2Q9NV92 336 aa12.13□□□□□ -0.47
SS18-214ENST00000580003 NSFL1CQ9UNZ2 370 aaKnown RBP12.13□□□□□ -0.47
SS18-214ENST00000580003 FGFR3P22607 806 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 SSFA2P28290 1259 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 DGKZQ13574 1117 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 ZNF280CQ8ND82 737 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 KLRG1Q96E93 195 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 KLK14Q9P0G3 267 aa12.12□□□□□ -0.47
SS18-214ENST00000580003 MAPTP10636 758 aaKnown RBP12.11□□□□□ -0.47
SS18-214ENST00000580003 TNP2Q05952 138 aa12.11□□□□□ -0.47
SS18-214ENST00000580003 C11orf91Q3C1V1 193 aa12.11□□□□□ -0.47
SS18-214ENST00000580003 C16orf46Q6P387 395 aa12.11□□□□□ -0.47
SS18-214ENST00000580003 CEP63Q96MT8 703 aa12.11□□□□□ -0.47
SS18-214ENST00000580003 NAA30Q147X3 362 aaPredicted RBP12.1□□□□□ -0.47
SS18-214ENST00000580003 TGFBR3LH3BV60 316 aa12.09□□□□□ -0.47
SS18-214ENST00000580003 SRSF11Q05519 484 aaKnown RBP12.09□□□□□ -0.47
SS18-214ENST00000580003 COX20Q5RI15 118 aa12.09□□□□□ -0.47
SS18-214ENST00000580003 BMP4P12644 408 aa12.08□□□□□ -0.48
SS18-214ENST00000580003 INSM1Q01101 510 aaPredicted RBP12.08□□□□□ -0.48
SS18-214ENST00000580003 LAMC2Q13753 1193 aa12.08□□□□□ -0.48
SS18-214ENST00000580003 IER5Q5VY09 327 aa12.08□□□□□ -0.48
SS18-214ENST00000580003 CAPN12Q6ZSI9 719 aa12.08□□□□□ -0.48
SS18-214ENST00000580003 MTMR7Q9Y216 660 aa12.08□□□□□ -0.48
SS18-214ENST00000580003 IGF1RP08069 1367 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 MAP2K3P46734 347 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 BTLAQ7Z6A9 289 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 IFT43Q96FT9 208 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 SAP130Q9H0E3 1048 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 BRD7Q9NPI1 651 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 MARK1Q9P0L2 795 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 LRFN2Q9ULH4 789 aa12.07□□□□□ -0.48
SS18-214ENST00000580003 EFSO43281 561 aa12.06□□□□□ -0.48
SS18-214ENST00000580003 ADAMTS2O95450 1211 aa12.06□□□□□ -0.48
SS18-214ENST00000580003 CD33P20138 364 aa12.06□□□□□ -0.48
SS18-214ENST00000580003 SEPT3Q9UH03 358 aa12.06□□□□□ -0.48
SS18-214ENST00000580003 BCS1LQ9Y276 419 aa12.06□□□□□ -0.48
SS18-214ENST00000580003 CTBSQ01459 385 aa12.05□□□□□ -0.48
SS18-214ENST00000580003 TYRO3Q06418 890 aa12.05□□□□□ -0.48
SS18-214ENST00000580003 BRD2P25440 801 aaKnown RBP12.04□□□□□ -0.48
SS18-214ENST00000580003 FAM182BQ5T319 152 aa12.04□□□□□ -0.48
SS18-214ENST00000580003 SCNN1AP37088 669 aa12.03□□□□□ -0.48
SS18-214ENST00000580003 PHLDB3Q6NSJ2 640 aa12.03□□□□□ -0.48
SS18-214ENST00000580003 STRN4Q9NRL3 753 aa12.03□□□□□ -0.48
SS18-214ENST00000580003 MICAL2O94851 1124 aa12.02□□□□□ -0.49
SS18-214ENST00000580003 SLURP2P0DP57 97 aa12.02□□□□□ -0.49
SS18-214ENST00000580003 IDH3AP50213 366 aa12.02□□□□□ -0.49
SS18-214ENST00000580003 SFSWAPQ12872 951 aaKnown RBP12.02□□□□□ -0.49
SS18-214ENST00000580003 DMGDHQ9UI17 866 aaKnown RBP12.02□□□□□ -0.49
SS18-214ENST00000580003 PRR12Q9ULL5 1215 aa12.02□□□□□ -0.49
SS18-214ENST00000580003 KCNH4Q9UQ05 1017 aa12.02□□□□□ -0.49
SS18-214ENST00000580003 EPB42P16452 691 aa12.01□□□□□ -0.49
SS18-214ENST00000580003 ZSCAN1Q8NBB4 408 aa12.01□□□□□ -0.49
SS18-214ENST00000580003 ARSDP51689 593 aa12□□□□□ -0.49
SS18-214ENST00000580003 KCNQ4P56696 695 aa12□□□□□ -0.49
SS18-214ENST00000580003 TREML1Q86YW5 311 aa12□□□□□ -0.49
SS18-214ENST00000580003 GTF3C2Q8WUA4 911 aaPredicted RBP12□□□□□ -0.49
SS18-214ENST00000580003 STIM2Q9P246 746 aa12□□□□□ -0.49
SS18-214ENST00000580003 C2CD2LO14523 706 aa11.99□□□□□ -0.49
SS18-214ENST00000580003 TNFRSF10BO14763 440 aa11.99□□□□□ -0.49
SS18-214ENST00000580003 OXCT2Q9BYC2 517 aaPredicted RBP11.99□□□□□ -0.49
SS18-214ENST00000580003 HCN2Q9UL51 889 aa11.99□□□□□ -0.49
SS18-214ENST00000580003 ARID4AP29374 1257 aaPredicted RBP11.98□□□□□ -0.49
SS18-214ENST00000580003 INPP5BP32019 993 aa11.98□□□□□ -0.49
SS18-214ENST00000580003 ABTB2Q8N961 1025 aa11.98□□□□□ -0.49
SS18-214ENST00000580003 HELQQ8TDG4 1101 aa11.98□□□□□ -0.49
SS18-214ENST00000580003 NEUROD1Q13562 356 aa11.97□□□□□ -0.49
SS18-214ENST00000580003 ETFBKMTQ8IXQ9 262 aa11.97□□□□□ -0.49
SS18-214ENST00000580003 GDF2Q9UK05 429 aaPredicted RBP11.97□□□□□ -0.49
SS18-214ENST00000580003 ABL1P00519 1130 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms