RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PRR5LQ6MZQ0 368 aa19.36■□□□□ 0.69
SS18-212ENST00000579061 LAS1LQ9Y4W2 734 aaKnown RBP19.36■□□□□ 0.69
SS18-212ENST00000579061 MAP3K15Q6ZN16 1313 aa19.35■□□□□ 0.69
SS18-212ENST00000579061 ZNF853P0CG23 659 aa19.35■□□□□ 0.69
SS18-212ENST00000579061 CNBD1Q8NA66 436 aa19.35■□□□□ 0.69
SS18-212ENST00000579061 BRIP1Q9BX63 1249 aa19.35■□□□□ 0.69
SS18-212ENST00000579061 H0YIN7 160 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 MYL6BP14649 208 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 EIF2S2P20042 333 aaKnown RBP19.34■□□□□ 0.69
SS18-212ENST00000579061 PDE6BP35913 854 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 GNAI1P63096 354 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 PDIA6Q15084 440 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 HLFQ16534 295 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 NCBP3Q53F19 620 aaKnown RBP19.34■□□□□ 0.69
SS18-212ENST00000579061 KIF6Q6ZMV9 814 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 IFT57Q9NWB7 429 aa19.34■□□□□ 0.69
SS18-212ENST00000579061 ST5P78524 1137 aa19.33■□□□□ 0.68
SS18-212ENST00000579061 TTLL7Q6ZT98 887 aa19.33■□□□□ 0.68
SS18-212ENST00000579061 LRP10Q7Z4F1 713 aa19.33■□□□□ 0.68
SS18-212ENST00000579061 C2CD5Q86YS7 1000 aa19.33■□□□□ 0.68
SS18-212ENST00000579061 NGEFQ8N5V2 710 aa19.33■□□□□ 0.68
SS18-212ENST00000579061 NIP7Q9Y221 180 aaKnown RBP eCLIP19.33■□□□□ 0.68
SS18-212ENST00000579061 NPHP1O15259 732 aa19.32■□□□□ 0.68
SS18-212ENST00000579061 CCDC27Q2M243 656 aa19.32■□□□□ 0.68
SS18-212ENST00000579061 NBPF5PQ86XG9 351 aaPredicted RBP19.32■□□□□ 0.68
SS18-212ENST00000579061 MBIPQ9NS73 344 aa19.32■□□□□ 0.68
SS18-212ENST00000579061 ATP10DQ9P241 1426 aa19.32■□□□□ 0.68
SS18-212ENST00000579061 TPTE2Q6XPS3 522 aa19.31■□□□□ 0.68
SS18-212ENST00000579061 ARHGAP27Q6ZUM4 889 aa19.31■□□□□ 0.68
SS18-212ENST00000579061 TTLL6Q8N841 843 aa19.31■□□□□ 0.68
SS18-212ENST00000579061 ADCY9O60503 1353 aa19.31■□□□□ 0.68
SS18-212ENST00000579061 KRT24Q2M2I5 525 aa19.3■□□□□ 0.68
SS18-212ENST00000579061 GIGYF2Q6Y7W6 1299 aaKnown RBP19.3■□□□□ 0.68
SS18-212ENST00000579061 DDX21Q9NR30 783 aaKnown RBP eCLIP19.3■□□□□ 0.68
SS18-212ENST00000579061 COL11A2P13942 1736 aaPredicted RBP19.3■□□□□ 0.68
SS18-212ENST00000579061 PROSER3Q2NL68 480 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 HDGFL1Q5TGJ6 251 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 DUSP27Q5VZP5 1158 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 CCDC24Q8N4L8 307 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 NYXQ9GZU5 481 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 ZBTB3Q9H5J0 574 aa19.28■□□□□ 0.68
SS18-212ENST00000579061 IBTKQ9P2D0 1353 aaPredicted RBP19.28■□□□□ 0.68
SS18-212ENST00000579061 ARFGEF2Q9Y6D5 1785 aa19.27■□□□□ 0.68
SS18-212ENST00000579061 SBF1O95248 1867 aa19.27■□□□□ 0.68
SS18-212ENST00000579061 KLRG2A4D1S0 409 aaPredicted RBP19.27■□□□□ 0.68
SS18-212ENST00000579061 ANXA1P04083 346 aa19.27■□□□□ 0.68
SS18-212ENST00000579061 ZNF34Q8IZ26 560 aa19.27■□□□□ 0.68
SS18-212ENST00000579061 NECTIN2Q92692 538 aa19.27■□□□□ 0.68
SS18-212ENST00000579061 SRGNP10124 158 aa19.26■□□□□ 0.67
SS18-212ENST00000579061 STYK1Q6J9G0 422 aa19.26■□□□□ 0.67
SS18-212ENST00000579061 COPS6Q7L5N1 327 aa19.26■□□□□ 0.67
SS18-212ENST00000579061 WWC1Q8IX03 1113 aa19.26■□□□□ 0.67
SS18-212ENST00000579061 DBF4Q9UBU7 674 aaPredicted RBP19.26■□□□□ 0.67
SS18-212ENST00000579061 ANKRD36CQ5JPF3 1778 aa19.26■□□□□ 0.67
SS18-212ENST00000579061 PARP10Q53GL7 1025 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 XAGE3Q8WTP9 111 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 CNKSR1Q969H4 720 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 ZNF622Q969S3 477 aaKnown RBP eCLIP19.25■□□□□ 0.672e-8■□□□□ 10.1
SS18-212ENST00000579061 MASTLQ96GX5 879 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 CHMP4AQ9BY43 222 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 IL16Q14005 1332 aa19.25■□□□□ 0.67
SS18-212ENST00000579061 GTF2E1P29083 439 aaPredicted RBP19.24■□□□□ 0.67
SS18-212ENST00000579061 HSP90AB3PQ58FF7 597 aa19.24■□□□□ 0.67
SS18-212ENST00000579061 CHPF2Q9P2E5 772 aa19.24■□□□□ 0.67
SS18-212ENST00000579061 RIC1Q4ADV7 1423 aa19.24■□□□□ 0.67
SS18-212ENST00000579061 UBN2Q6ZU65 1347 aa19.24■□□□□ 0.67
SS18-212ENST00000579061 CACNA1SQ13698 1873 aa19.23■□□□□ 0.67
SS18-212ENST00000579061 FAM177BA6PVY3 158 aa19.23■□□□□ 0.67
SS18-212ENST00000579061 HYPKQ9NX55 129 aa19.23■□□□□ 0.67
SS18-212ENST00000579061 SLX4Q8IY92 1834 aa19.23■□□□□ 0.67
SS18-212ENST00000579061 NPR1P16066 1061 aa19.22■□□□□ 0.67
SS18-212ENST00000579061 GPTP24298 496 aa19.22■□□□□ 0.67
SS18-212ENST00000579061 AIMP1Q12904 312 aaKnown RBP19.22■□□□□ 0.67
SS18-212ENST00000579061 PPP1R42Q7Z4L9 355 aa19.22■□□□□ 0.67
SS18-212ENST00000579061 FER1L6Q2WGJ9 1857 aa19.22■□□□□ 0.67
SS18-212ENST00000579061 CCDC88AQ3V6T2 1871 aa19.21■□□□□ 0.67
SS18-212ENST00000579061 SUSD4Q5VX71 490 aa19.21■□□□□ 0.67
SS18-212ENST00000579061 C8orf58Q8NAV2 365 aa19.21■□□□□ 0.67
SS18-212ENST00000579061 RNF123Q5XPI4 1314 aa19.21■□□□□ 0.67
SS18-212ENST00000579061 NTSR2O95665 410 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 TCIRG1Q13488 830 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 C9orf131Q5VYM1 1079 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 WDR63Q8IWG1 891 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 FAM9BQ8IZU0 186 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 PLBD2Q8NHP8 589 aa19.2■□□□□ 0.66
SS18-212ENST00000579061 ABCC12Q96J65 1359 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 CRY2Q49AN0 593 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 ERFEQ4G0M1 354 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 SOGA3Q5TF21 947 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 PRPF40BQ6NWY9 871 aaKnown RBP19.19■□□□□ 0.66
SS18-212ENST00000579061 ANKRD13DQ6ZTN6 518 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 NUTM1Q86Y26 1132 aa19.19■□□□□ 0.66
SS18-212ENST00000579061 GPBP1L1Q9HC44 474 aaPredicted RBP19.19■□□□□ 0.66
SS18-212ENST00000579061 TNRC6CQ9HCJ0 1690 aaKnown RBP19.19■□□□□ 0.66
SS18-212ENST00000579061 ELL2O00472 640 aaPredicted RBP19.18■□□□□ 0.66
SS18-212ENST00000579061 ALDH1B1P30837 517 aa19.18■□□□□ 0.66
SS18-212ENST00000579061 UTP14AQ9BVJ6 771 aaKnown RBP19.18■□□□□ 0.66
SS18-212ENST00000579061 RNF181Q9P0P0 153 aa19.18■□□□□ 0.66
SS18-212ENST00000579061 C21orf2O43822 256 aa19.17■□□□□ 0.66
SS18-212ENST00000579061 LMNB1P20700 586 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms