RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZNF853P0CG23 659 aa25.27■■□□□ 1.64
SS18-209ENST00000578595 CCDC27Q2M243 656 aa25.27■■□□□ 1.64
SS18-209ENST00000578595 DUSP27Q5VZP5 1158 aa25.27■■□□□ 1.64
SS18-209ENST00000578595 ZBTB3Q9H5J0 574 aa25.27■■□□□ 1.64
SS18-209ENST00000578595 ANKRD36CQ5JPF3 1778 aa25.26■■□□□ 1.63
SS18-209ENST00000578595 FAM177BA6PVY3 158 aa25.26■■□□□ 1.63
SS18-209ENST00000578595 DPEP1P16444 411 aa25.26■■□□□ 1.63
SS18-209ENST00000578595 YBX3P16989 372 aaKnown RBP eCLIP25.26■■□□□ 1.63
SS18-209ENST00000578595 TTLL7Q6ZT98 887 aa25.26■■□□□ 1.63
SS18-209ENST00000578595 DLEC1Q9Y238 1755 aa25.26■■□□□ 1.63
SS18-209ENST00000578595 AIMP1Q12904 312 aaKnown RBP25.25■■□□□ 1.63
SS18-209ENST00000578595 PROSER3Q2NL68 480 aa25.25■■□□□ 1.63
SS18-209ENST00000578595 DIEXFQ68CQ4 756 aaKnown RBP25.25■■□□□ 1.63
SS18-209ENST00000578595 CCDC24Q8N4L8 307 aa25.25■■□□□ 1.63
SS18-209ENST00000578595 CNBD1Q8NA66 436 aa25.25■■□□□ 1.63
SS18-209ENST00000578595 TSR2Q969E8 191 aaKnown RBP25.25■■□□□ 1.63
SS18-209ENST00000578595 NIP7Q9Y221 180 aaKnown RBP eCLIP25.25■■□□□ 1.63
SS18-209ENST00000578595 MAP3K15Q6ZN16 1313 aa25.25■■□□□ 1.63
SS18-209ENST00000578595 HLFQ16534 295 aa25.24■■□□□ 1.63
SS18-209ENST00000578595 CLEC4GQ6UXB4 293 aa25.24■■□□□ 1.63
SS18-209ENST00000578595 CHPF2Q9P2E5 772 aa25.24■■□□□ 1.63
SS18-209ENST00000578595 BCS1LQ9Y276 419 aa25.24■■□□□ 1.63
SS18-209ENST00000578595 ARFGEF1Q9Y6D6 1849 aa25.23■■□□□ 1.63
SS18-209ENST00000578595 GRIN3BO60391 1043 aa25.23■■□□□ 1.63
SS18-209ENST00000578595 HOXB7P09629 217 aa25.23■■□□□ 1.63
SS18-209ENST00000578595 CHRNA5P30532 468 aa25.23■■□□□ 1.63
SS18-209ENST00000578595 NBPF5PQ86XG9 351 aaPredicted RBP25.23■■□□□ 1.63
SS18-209ENST00000578595 YY1P25490 414 aa25.22■■□□□ 1.63
SS18-209ENST00000578595 ST5P78524 1137 aa25.22■■□□□ 1.63
SS18-209ENST00000578595 COL11A2P13942 1736 aaPredicted RBP25.21■■□□□ 1.63
SS18-209ENST00000578595 PRR5LQ6MZQ0 368 aa25.21■■□□□ 1.63
SS18-209ENST00000578595 DDX21Q9NR30 783 aaKnown RBP eCLIP25.21■■□□□ 1.63
SS18-209ENST00000578595 ERVV-1B6SEH8 477 aa25.2■■□□□ 1.62
SS18-209ENST00000578595 CCER2I3L3R5 266 aa25.2■■□□□ 1.62
SS18-209ENST00000578595 GTF2E1P29083 439 aaPredicted RBP25.2■■□□□ 1.62
SS18-209ENST00000578595 PDIA6Q15084 440 aa25.2■■□□□ 1.62
SS18-209ENST00000578595 XAGE3Q8WTP9 111 aa25.2■■□□□ 1.62
SS18-209ENST00000578595 IL16Q14005 1332 aa25.19■■□□□ 1.62
SS18-209ENST00000578595 GPTP24298 496 aa25.19■■□□□ 1.62
SS18-209ENST00000578595 COPS6Q7L5N1 327 aa25.19■■□□□ 1.62
SS18-209ENST00000578595 DBF4Q9UBU7 674 aaPredicted RBP25.19■■□□□ 1.62
SS18-209ENST00000578595 ARFGEF2Q9Y6D5 1785 aa25.18■■□□□ 1.62
SS18-209ENST00000578595 NCBP3Q53F19 620 aaKnown RBP25.18■■□□□ 1.62
SS18-209ENST00000578595 C2CD5Q86YS7 1000 aa25.18■■□□□ 1.62
SS18-209ENST00000578595 C8orf58Q8NAV2 365 aa25.18■■□□□ 1.62
SS18-209ENST00000578595 PIM2Q9P1W9 311 aa25.18■■□□□ 1.62
SS18-209ENST00000578595 RGL2O15211 777 aa25.17■■□□□ 1.62
SS18-209ENST00000578595 H0YIN7 160 aa25.16■■□□□ 1.62
SS18-209ENST00000578595 PDE6BP35913 854 aa25.16■■□□□ 1.62
SS18-209ENST00000578595 WDR63Q8IWG1 891 aa25.16■■□□□ 1.62
SS18-209ENST00000578595 ATP10DQ9P241 1426 aa25.16■■□□□ 1.62
SS18-209ENST00000578595 FANCIQ9NVI1 1328 aa25.15■■□□□ 1.62
SS18-209ENST00000578595 DALRD3Q5D0E6 543 aaKnown RBP25.15■■□□□ 1.62
SS18-209ENST00000578595 TPTE2Q6XPS3 522 aa25.15■■□□□ 1.62
SS18-209ENST00000578595 GIGYF2Q6Y7W6 1299 aaKnown RBP25.15■■□□□ 1.62
SS18-209ENST00000578595 LRP10Q7Z4F1 713 aa25.15■■□□□ 1.62
SS18-209ENST00000578595 HYPKQ9NX55 129 aa25.15■■□□□ 1.62
SS18-209ENST00000578595 GOLGB1Q14789 3259 aaKnown RBP25.15■■□□□ 1.62
SS18-209ENST00000578595 CACNA1FO60840 1977 aa25.14■■□□□ 1.62
SS18-209ENST00000578595 TSPYL6Q8N831 410 aa25.14■■□□□ 1.62
SS18-209ENST00000578595 BRIP1Q9BX63 1249 aa25.14■■□□□ 1.62
SS18-209ENST00000578595 KCNA3P22001 575 aa25.13■■□□□ 1.61
SS18-209ENST00000578595 TWISTNBQ3B726 338 aaPredicted RBP25.13■■□□□ 1.61
SS18-209ENST00000578595 CCDC30Q5VVM6 783 aa25.13■■□□□ 1.61
SS18-209ENST00000578595 ZNF622Q969S3 477 aaKnown RBP eCLIP25.13■■□□□ 1.61
SS18-209ENST00000578595 CHMP4AQ9BY43 222 aa25.13■■□□□ 1.61
SS18-209ENST00000578595 NYXQ9GZU5 481 aa25.13■■□□□ 1.61
SS18-209ENST00000578595 TNRC6CQ9HCJ0 1690 aaKnown RBP25.12■■□□□ 1.61
SS18-209ENST00000578595 TCERG1O14776 1098 aaKnown RBP25.11■■□□□ 1.61
SS18-209ENST00000578595 GOLGA2Q08379 1002 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 HSP90AB3PQ58FF7 597 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 MIER1Q8N108 512 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 STK31Q9BXU1 1019 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 MYH16Q9H6N6 1097 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 UBN2Q6ZU65 1347 aa25.11■■□□□ 1.61
SS18-209ENST00000578595 ARHGAP27Q6ZUM4 889 aa25.1■■□□□ 1.61
SS18-209ENST00000578595 NUTM1Q86Y26 1132 aa25.1■■□□□ 1.61
SS18-209ENST00000578595 PDZRN3Q9UPQ7 1066 aa25.09■■□□□ 1.61
SS18-209ENST00000578595 UTRNP46939 3433 aa25.09■■□□□ 1.61
SS18-209ENST00000578595 CCDC88AQ3V6T2 1871 aa25.09■■□□□ 1.61
SS18-209ENST00000578595 ANKRD13DQ6ZTN6 518 aa25.08■■□□□ 1.61
SS18-209ENST00000578595 PPP1R42Q7Z4L9 355 aa25.08■■□□□ 1.61
SS18-209ENST00000578595 ZNF34Q8IZ26 560 aa25.08■■□□□ 1.61
SS18-209ENST00000578595 TTLL6Q8N841 843 aa25.08■■□□□ 1.61
SS18-209ENST00000578595 PLBD2Q8NHP8 589 aa25.08■■□□□ 1.61
SS18-209ENST00000578595 PHAXQ9H814 394 aaKnown RBP25.08■■□□□ 1.61
SS18-209ENST00000578595 ABCC12Q96J65 1359 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 EXOSC9Q06265 439 aaKnown RBP25.07■■□□□ 1.6
SS18-209ENST00000578595 PARP10Q53GL7 1025 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 SUSD4Q5VX71 490 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 RIC3Q7Z5B4 369 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 ZNF428Q96B54 188 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 ZNF219Q9P2Y4 722 aaPredicted RBP25.07■■□□□ 1.6
SS18-209ENST00000578595 SLX4Q8IY92 1834 aa25.07■■□□□ 1.6
SS18-209ENST00000578595 ERFEQ4G0M1 354 aa25.06■■□□□ 1.6
SS18-209ENST00000578595 SPINK5Q9NQ38 1064 aaPredicted RBP25.06■■□□□ 1.6
SS18-209ENST00000578595 IBTKQ9P2D0 1353 aaPredicted RBP25.05■■□□□ 1.6
SS18-209ENST00000578595 LAMB2P55268 1798 aa25.05■■□□□ 1.6
SS18-209ENST00000578595 UTP14AQ9BVJ6 771 aaKnown RBP25.05■■□□□ 1.6
SS18-209ENST00000578595 DDX58O95786 925 aaKnown RBP25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms