RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SYT17Q9BSW7 474 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 NARFQ9UHQ1 456 aa10.99□□□□□ -0.65
NUP88-211ENST00000575976 CAMTA2O94983 1202 aa10.98□□□□□ -0.65
NUP88-211ENST00000575976 RARSP54136 660 aaKnown RBP10.98□□□□□ -0.65
NUP88-211ENST00000575976 ALDH1L2Q3SY69 923 aa10.98□□□□□ -0.65
NUP88-211ENST00000575976 MRPL50Q8N5N7 158 aaKnown RBP10.98□□□□□ -0.65
NUP88-211ENST00000575976 BCL2L13Q9BXK5 485 aa10.98□□□□□ -0.65
NUP88-211ENST00000575976 BCL2L12Q9HB09 334 aa10.98□□□□□ -0.65
NUP88-211ENST00000575976 USP42Q9H9J4 1324 aaKnown RBP10.98□□□□□ -0.65
NUP88-211ENST00000575976 ZPR1O75312 459 aa10.97□□□□□ -0.65
NUP88-211ENST00000575976 GYS1P13807 737 aa10.97□□□□□ -0.65
NUP88-211ENST00000575976 KIF6Q6ZMV9 814 aa10.97□□□□□ -0.65
NUP88-211ENST00000575976 ZBTB3Q9H5J0 574 aa10.97□□□□□ -0.65
NUP88-211ENST00000575976 QSER1Q2KHR3 1735 aa10.97□□□□□ -0.65
NUP88-211ENST00000575976 CASZ1Q86V15 1759 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 MAP3K15Q6ZN16 1313 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 ZBTB7AO95365 584 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 FLIIQ13045 1269 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 FKBP8Q14318 412 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 HLFQ16534 295 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 MSL1Q68DK7 614 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 SLC16A10Q8TF71 515 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 FHDC1Q9C0D6 1143 aaPredicted RBP10.96□□□□□ -0.65
NUP88-211ENST00000575976 SMC4Q9NTJ3 1288 aa10.96□□□□□ -0.65
NUP88-211ENST00000575976 ERVV-1B6SEH8 477 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 BCAR3O75815 825 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 ANKRD13DQ6ZTN6 518 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 RIC3Q7Z5B4 369 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 PLBD2Q8NHP8 589 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 ATF5Q9Y2D1 282 aaPredicted RBP10.95□□□□□ -0.66
NUP88-211ENST00000575976 C4AP0C0L4 1744 aa10.95□□□□□ -0.66
NUP88-211ENST00000575976 PI4KAP2A4QPH2 592 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 PTGER2P43116 358 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 FKBP5Q13451 457 aaPredicted RBP10.94□□□□□ -0.66
NUP88-211ENST00000575976 TBC1D9BQ66K14 1250 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 GIGYF2Q6Y7W6 1299 aaKnown RBP10.94□□□□□ -0.66
NUP88-211ENST00000575976 NLGN1Q8N2Q7 840 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 PI4KAP1Q8N8J0 262 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 MTFR1LQ9H019 292 aa10.94□□□□□ -0.66
NUP88-211ENST00000575976 NOB1Q9ULX3 412 aaKnown RBP10.94□□□□□ -0.66
NUP88-211ENST00000575976 RGL2O15211 777 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 DDX58O95786 925 aaKnown RBP10.93□□□□□ -0.66
NUP88-211ENST00000575976 TM4SF1P30408 202 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 BRPF1P55201 1214 aaPredicted RBP10.93□□□□□ -0.66
NUP88-211ENST00000575976 NFIXQ14938 502 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 GPR162Q16538 588 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 CLEC4GQ6UXB4 293 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 KSR2Q6VAB6 950 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 BICDL1Q6ZP65 573 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 RCAN3Q9UKA8 241 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 ZNF652Q9Y2D9 606 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 MAP3K2Q9Y2U5 619 aa10.93□□□□□ -0.66
NUP88-211ENST00000575976 ADCY9O60503 1353 aa10.92□□□□□ -0.66
NUP88-211ENST00000575976 F6X3S4 739 aa10.92□□□□□ -0.66
NUP88-211ENST00000575976 GPTP24298 496 aa10.92□□□□□ -0.66
NUP88-211ENST00000575976 TCIRG1Q13488 830 aa10.92□□□□□ -0.66
NUP88-211ENST00000575976 NIP7Q9Y221 180 aaKnown RBP eCLIP10.92□□□□□ -0.66
NUP88-211ENST00000575976 PTPRCP08575 1304 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 BCORQ6W2J9 1755 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 ATP5J2-PTCD1G3V325 749 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 MMP10P09238 476 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 DDR1Q08345 913 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 HSP90AB3PQ58FF7 597 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 ZNF34Q8IZ26 560 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 DNAAF4Q8WXU2 420 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 FRAT1Q92837 279 aaPredicted RBP10.91□□□□□ -0.66
NUP88-211ENST00000575976 MYD88Q99836 296 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 SGIP1Q9BQI5 828 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 METTL22Q9BUU2 404 aaPredicted RBP10.91□□□□□ -0.66
NUP88-211ENST00000575976 SCN7AQ01118 1682 aa10.91□□□□□ -0.66
NUP88-211ENST00000575976 KIF16BQ96L93 1317 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 POLRMTO00411 1230 aaKnown RBP10.9□□□□□ -0.66
NUP88-211ENST00000575976 SETDB2Q96T68 719 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 ISCA1Q9BUE6 129 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 TNNQ9UQP3 1299 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 ATP10DQ9P241 1426 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 CACNA1FO60840 1977 aa10.9□□□□□ -0.66
NUP88-211ENST00000575976 UBN2Q6ZU65 1347 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 FAM177BA6PVY3 158 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 IPO8O15397 1037 aaKnown RBP10.89□□□□□ -0.67
NUP88-211ENST00000575976 SERPINB2P05120 415 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 POLD1P28340 1107 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 SUSD4Q5VX71 490 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 SLC4A10Q6U841 1118 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 ARHGAP45Q92619 1136 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 API5Q9BZZ5 524 aaKnown RBP10.89□□□□□ -0.67
NUP88-211ENST00000575976 PARP3Q9Y6F1 533 aa10.89□□□□□ -0.67
NUP88-211ENST00000575976 NUP98P52948 1817 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 IGKV5-2P06315 115 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 NEXNQ0ZGT2 675 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 TRIM28Q13263 835 aaKnown RBP10.88□□□□□ -0.67
NUP88-211ENST00000575976 CWF19L2Q2TBE0 894 aaKnown RBP10.88□□□□□ -0.67
NUP88-211ENST00000575976 PARP10Q53GL7 1025 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 BEND3Q5T5X7 828 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 ZKSCAN2Q63HK3 967 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 ATF7IPQ6VMQ6 1270 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 NLRP10Q86W26 655 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 CARMIL3Q8ND23 1372 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 ARFGEF2Q9Y6D5 1785 aa10.88□□□□□ -0.67
NUP88-211ENST00000575976 COL24A1Q17RW2 1714 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms