RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 UTRNP46939 3433 aa17.6■□□□□ 0.41
CIITA-210ENST00000575513 PXDNLA1KZ92 1463 aa17.59■□□□□ 0.41
CIITA-210ENST00000575513 A0A0G2JLW4 131 aa17.59■□□□□ 0.41
CIITA-210ENST00000575513 DPEP1P16444 411 aa17.59■□□□□ 0.41
CIITA-210ENST00000575513 TTLL7Q6ZT98 887 aa17.59■□□□□ 0.41
CIITA-210ENST00000575513 YBX3P16989 372 aaKnown RBP eCLIP17.58■□□□□ 0.4
CIITA-210ENST00000575513 KCNA3P22001 575 aa17.58■□□□□ 0.4
CIITA-210ENST00000575513 HLFQ16534 295 aa17.58■□□□□ 0.4
CIITA-210ENST00000575513 BRIP1Q9BX63 1249 aa17.58■□□□□ 0.4
CIITA-210ENST00000575513 HYPKQ9NX55 129 aa17.58■□□□□ 0.4
CIITA-210ENST00000575513 NIP7Q9Y221 180 aaKnown RBP eCLIP17.58■□□□□ 0.4
CIITA-210ENST00000575513 GOLGB1Q14789 3259 aaKnown RBP17.58■□□□□ 0.4
CIITA-210ENST00000575513 PROSER3Q2NL68 480 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 PRR5LQ6MZQ0 368 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 TPTE2Q6XPS3 522 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 GIGYF2Q6Y7W6 1299 aaKnown RBP17.57■□□□□ 0.4
CIITA-210ENST00000575513 PELP1Q8IZL8 1130 aaKnown RBP17.57■□□□□ 0.4
CIITA-210ENST00000575513 CNBD1Q8NA66 436 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 C8orf58Q8NAV2 365 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 PIM2Q9P1W9 311 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 NRXN2Q9P2S2 1712 aa17.57■□□□□ 0.4
CIITA-210ENST00000575513 PDE6BP35913 854 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 COPS6Q7L5N1 327 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 NBPF5PQ86XG9 351 aaPredicted RBP17.56■□□□□ 0.4
CIITA-210ENST00000575513 MIER1Q8N108 512 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 NECTIN2Q92692 538 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 CHPF2Q9P2E5 772 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 BCORQ6W2J9 1755 aa17.56■□□□□ 0.4
CIITA-210ENST00000575513 ATP10DQ9P241 1426 aa17.55■□□□□ 0.4
CIITA-210ENST00000575513 ST5P78524 1137 aa17.55■□□□□ 0.4
CIITA-210ENST00000575513 ZNF34Q8IZ26 560 aa17.55■□□□□ 0.4
CIITA-210ENST00000575513 XAGE3Q8WTP9 111 aa17.55■□□□□ 0.4
CIITA-210ENST00000575513 SENP3-EIF4A1A0A087X0R7 540 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 H0YIN7 160 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 ANXA1P04083 346 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 HSP90AB3PQ58FF7 597 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 CCDC30Q5VVM6 783 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 TSR2Q969E8 191 aaKnown RBP17.54■□□□□ 0.4
CIITA-210ENST00000575513 NYXQ9GZU5 481 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 ZBTB3Q9H5J0 574 aa17.54■□□□□ 0.4
CIITA-210ENST00000575513 SALL2Q9Y467 1007 aaPredicted RBP17.54■□□□□ 0.4
CIITA-210ENST00000575513 ELL2O00472 640 aaPredicted RBP17.53■□□□□ 0.4
CIITA-210ENST00000575513 NPHP1O15259 732 aa17.53■□□□□ 0.4
CIITA-210ENST00000575513 GOLGA2Q08379 1002 aa17.53■□□□□ 0.4
CIITA-210ENST00000575513 PARP10Q53GL7 1025 aa17.53■□□□□ 0.4
CIITA-210ENST00000575513 DALRD3Q5D0E6 543 aaKnown RBP17.53■□□□□ 0.4
CIITA-210ENST00000575513 MYH16Q9H6N6 1097 aa17.53■□□□□ 0.4
CIITA-210ENST00000575513 IBTKQ9P2D0 1353 aaPredicted RBP17.53■□□□□ 0.4
CIITA-210ENST00000575513 ZNF521Q96K83 1311 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 KLRG2A4D1S0 409 aaPredicted RBP17.52■□□□□ 0.4
CIITA-210ENST00000575513 CHRNA5P30532 468 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 ANKRD13DQ6ZTN6 518 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 TSPYL6Q8N831 410 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 PLBD2Q8NHP8 589 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 BCS1LQ9Y276 419 aa17.52■□□□□ 0.4
CIITA-210ENST00000575513 KIAA1551Q9HCM1 1747 aa17.52■□□□□ 0.39
CIITA-210ENST00000575513 AFDNP55196 1824 aaKnown RBP17.51■□□□□ 0.39
CIITA-210ENST00000575513 FANCIQ9NVI1 1328 aa17.51■□□□□ 0.39
CIITA-210ENST00000575513 YY1P25490 414 aa17.51■□□□□ 0.39
CIITA-210ENST00000575513 AIMP1Q12904 312 aaKnown RBP17.51■□□□□ 0.39
CIITA-210ENST00000575513 TWISTNBQ3B726 338 aaPredicted RBP17.51■□□□□ 0.39
CIITA-210ENST00000575513 C2CD5Q86YS7 1000 aa17.51■□□□□ 0.39
CIITA-210ENST00000575513 TCIRG1Q13488 830 aa17.5■□□□□ 0.39
CIITA-210ENST00000575513 PPP1R42Q7Z4L9 355 aa17.5■□□□□ 0.39
CIITA-210ENST00000575513 TTLL6Q8N841 843 aa17.5■□□□□ 0.39
CIITA-210ENST00000575513 RNF123Q5XPI4 1314 aa17.49■□□□□ 0.39
CIITA-210ENST00000575513 GTF2E1P29083 439 aaPredicted RBP17.49■□□□□ 0.39
CIITA-210ENST00000575513 UBN2Q6ZU65 1347 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 SRGNP10124 158 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 GPTP24298 496 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 SUSD4Q5VX71 490 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 STYK1Q6J9G0 422 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 STK31Q9BXU1 1019 aa17.48■□□□□ 0.39
CIITA-210ENST00000575513 SPINK5Q9NQ38 1064 aaPredicted RBP17.48■□□□□ 0.39
CIITA-210ENST00000575513 N4BP2Q86UW6 1770 aaPredicted RBP17.48■□□□□ 0.39
CIITA-210ENST00000575513 VAMP4O75379 141 aa17.47■□□□□ 0.39
CIITA-210ENST00000575513 TRIM28Q13263 835 aaKnown RBP17.47■□□□□ 0.39
CIITA-210ENST00000575513 CCDC24Q8N4L8 307 aa17.47■□□□□ 0.39
CIITA-210ENST00000575513 CNKSR1Q969H4 720 aa17.47■□□□□ 0.39
CIITA-210ENST00000575513 MASTLQ96GX5 879 aa17.47■□□□□ 0.39
CIITA-210ENST00000575513 UTP14AQ9BVJ6 771 aaKnown RBP17.47■□□□□ 0.39
CIITA-210ENST00000575513 WWC3Q9ULE0 1092 aa17.47■□□□□ 0.39
CIITA-210ENST00000575513 NTSR2O95665 410 aa17.46■□□□□ 0.39
CIITA-210ENST00000575513 DDX58O95786 925 aaKnown RBP17.46■□□□□ 0.39
CIITA-210ENST00000575513 EXOSC9Q06265 439 aaKnown RBP17.46■□□□□ 0.39
CIITA-210ENST00000575513 SLC10A5Q5PT55 438 aa17.46■□□□□ 0.39
CIITA-210ENST00000575513 NLRP10Q86W26 655 aa17.46■□□□□ 0.39
CIITA-210ENST00000575513 PHAXQ9H814 394 aaKnown RBP17.46■□□□□ 0.39
CIITA-210ENST00000575513 NUP98P52948 1817 aa17.46■□□□□ 0.39
CIITA-210ENST00000575513 RIC1Q4ADV7 1423 aa17.46■□□□□ 0.39
CIITA-210ENST00000575513 FAM177BA6PVY3 158 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 E9PSI1 815 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 NPR1P16066 1061 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 ERFEQ4G0M1 354 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 RIC3Q7Z5B4 369 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 ZNF622Q969S3 477 aaKnown RBP eCLIP17.45■□□□□ 0.38
CIITA-210ENST00000575513 ISCA1Q9BUE6 129 aa17.45■□□□□ 0.38
CIITA-210ENST00000575513 BRCA1P38398 1863 aaKnown RBP17.44■□□□□ 0.38
CIITA-210ENST00000575513 SLC4A2P04920 1241 aa17.44■□□□□ 0.38
CIITA-210ENST00000575513 CRY2Q49AN0 593 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms