RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 NPM2Q86SE8 214 aaKnown RBP20.5■□□□□ 0.87
CHD3-215ENST00000572750 DZIP3Q86Y13 1208 aaKnown RBP20.5■□□□□ 0.87
CHD3-215ENST00000572750 JMYQ8N9B5 988 aa20.5■□□□□ 0.87
CHD3-215ENST00000572750 BCL2L12Q9HB09 334 aa20.5■□□□□ 0.87
CHD3-215ENST00000572750 SPINK5Q9NQ38 1064 aaPredicted RBP20.5■□□□□ 0.87
CHD3-215ENST00000572750 ERBB4Q15303 1308 aa20.5■□□□□ 0.87
CHD3-215ENST00000572750 AFDNP55196 1824 aaKnown RBP20.49■□□□□ 0.87
CHD3-215ENST00000572750 ANXA1P04083 346 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 HOXB7P09629 217 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 PROSER3Q2NL68 480 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 HDGFL1Q5TGJ6 251 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 TNS4Q8IZW8 715 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 NLGN1Q8N2Q7 840 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 C8orf58Q8NAV2 365 aa20.49■□□□□ 0.87
CHD3-215ENST00000572750 ELL2O00472 640 aaPredicted RBP20.48■□□□□ 0.87
CHD3-215ENST00000572750 TOMM70O94826 608 aa20.48■□□□□ 0.87
CHD3-215ENST00000572750 CAMTA2O94983 1202 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 DDR1Q08345 913 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 PDIA6Q15084 440 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 KLRG1Q96E93 195 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 CHPF2Q9P2E5 772 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 KIF13BQ9NQT8 1826 aa20.47■□□□□ 0.87
CHD3-215ENST00000572750 NUP98P52948 1817 aa20.46■□□□□ 0.87
CHD3-215ENST00000572750 TSPYL6Q8N831 410 aa20.46■□□□□ 0.87
CHD3-215ENST00000572750 NRXN2Q9P2S2 1712 aa20.46■□□□□ 0.87
CHD3-215ENST00000572750 LRP10Q7Z4F1 713 aa20.45■□□□□ 0.86
CHD3-215ENST00000572750 NMRK2Q9NPI5 230 aa20.45■□□□□ 0.86
CHD3-215ENST00000572750 C10orf71Q711Q0 1435 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 KIAA1551Q9HCM1 1747 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 ANKRD36CQ5JPF3 1778 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 NFIXQ14938 502 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 BICDL1Q6ZP65 573 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 TTLL7Q6ZT98 887 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 PARP3Q9Y6F1 533 aa20.44■□□□□ 0.86
CHD3-215ENST00000572750 TBC1D9BQ66K14 1250 aa20.43■□□□□ 0.86
CHD3-215ENST00000572750 KIF6Q6ZMV9 814 aa20.43■□□□□ 0.86
CHD3-215ENST00000572750 MYH16Q9H6N6 1097 aa20.43■□□□□ 0.86
CHD3-215ENST00000572750 ARFGEF2Q9Y6D5 1785 aa20.42■□□□□ 0.86
CHD3-215ENST00000572750 POLRMTO00411 1230 aaKnown RBP20.42■□□□□ 0.86
CHD3-215ENST00000572750 TWISTNBQ3B726 338 aaPredicted RBP20.42■□□□□ 0.86
CHD3-215ENST00000572750 ZBTB3Q9H5J0 574 aa20.42■□□□□ 0.86
CHD3-215ENST00000572750 DDX21Q9NR30 783 aaKnown RBP eCLIP20.42■□□□□ 0.86
CHD3-215ENST00000572750 TM4SF1P30408 202 aa20.41■□□□□ 0.86
CHD3-215ENST00000572750 EXOSC9Q06265 439 aaKnown RBP20.41■□□□□ 0.86
CHD3-215ENST00000572750 GOLGA2Q08379 1002 aa20.41■□□□□ 0.86
CHD3-215ENST00000572750 MAP3K15Q6ZN16 1313 aa20.41■□□□□ 0.86
CHD3-215ENST00000572750 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
CHD3-215ENST00000572750 SLC34A2O95436 690 aa20.4■□□□□ 0.86
CHD3-215ENST00000572750 HLFQ16534 295 aa20.4■□□□□ 0.86
CHD3-215ENST00000572750 CARMIL3Q8ND23 1372 aa20.4■□□□□ 0.86
CHD3-215ENST00000572750 XAGE3Q8WTP9 111 aa20.4■□□□□ 0.86
CHD3-215ENST00000572750 DBF4Q9UBU7 674 aaPredicted RBP20.4■□□□□ 0.86
CHD3-215ENST00000572750 ZNF652Q9Y2D9 606 aa20.4■□□□□ 0.86
CHD3-215ENST00000572750 HNRNPUQ00839 825 aaKnown RBP eCLIP20.39■□□□□ 0.85
CHD3-215ENST00000572750 AIMP1Q12904 312 aaKnown RBP20.39■□□□□ 0.85
CHD3-215ENST00000572750 ANKRD31Q8N7Z5 1873 aa20.39■□□□□ 0.85
CHD3-215ENST00000572750 TCERG1O14776 1098 aaKnown RBP20.38■□□□□ 0.85
CHD3-215ENST00000572750 COPS6Q7L5N1 327 aa20.38■□□□□ 0.85
CHD3-215ENST00000572750 CDCA7LQ96GN5 454 aa20.38■□□□□ 0.85
CHD3-215ENST00000572750 PXDNLA1KZ92 1463 aa20.37■□□□□ 0.85
CHD3-215ENST00000572750 E9PSI1 815 aa20.37■□□□□ 0.85
CHD3-215ENST00000572750 CCDC30Q5VVM6 783 aa20.37■□□□□ 0.85
CHD3-215ENST00000572750 CLEC4GQ6UXB4 293 aa20.37■□□□□ 0.85
CHD3-215ENST00000572750 COL11A2P13942 1736 aaPredicted RBP20.36■□□□□ 0.85
CHD3-215ENST00000572750 ERVV-1B6SEH8 477 aa20.36■□□□□ 0.85
CHD3-215ENST00000572750 SERPINB2P05120 415 aa20.36■□□□□ 0.85
CHD3-215ENST00000572750 RBM46Q8TBY0 533 aaKnown RBP20.36■□□□□ 0.85
CHD3-215ENST00000572750 SETDB2Q96T68 719 aa20.36■□□□□ 0.85
CHD3-215ENST00000572750 HYPKQ9NX55 129 aa20.36■□□□□ 0.85
CHD3-215ENST00000572750 BRCA1P38398 1863 aaKnown RBP20.35■□□□□ 0.85
CHD3-215ENST00000572750 RGL2O15211 777 aa20.35■□□□□ 0.85
CHD3-215ENST00000572750 SLFN5Q08AF3 891 aa20.35■□□□□ 0.85
CHD3-215ENST00000572750 NIP7Q9Y221 180 aaKnown RBP eCLIP20.35■□□□□ 0.85
CHD3-215ENST00000572750 DLEC1Q9Y238 1755 aa20.34■□□□□ 0.85
CHD3-215ENST00000572750 PHAXQ9H814 394 aaKnown RBP20.34■□□□□ 0.85
CHD3-215ENST00000572750 CACNA1FO60840 1977 aa20.34■□□□□ 0.85
CHD3-215ENST00000572750 UBN2Q6ZU65 1347 aa20.33■□□□□ 0.85
CHD3-215ENST00000572750 TNRC6CQ9HCJ0 1690 aaKnown RBP20.33■□□□□ 0.85
CHD3-215ENST00000572750 VAMP4O75379 141 aa20.33■□□□□ 0.85
CHD3-215ENST00000572750 GPTP24298 496 aa20.33■□□□□ 0.85
CHD3-215ENST00000572750 STK31Q9BXU1 1019 aa20.33■□□□□ 0.85
CHD3-215ENST00000572750 PRR5LQ6MZQ0 368 aa20.32■□□□□ 0.84
CHD3-215ENST00000572750 GIGYF2Q6Y7W6 1299 aaKnown RBP20.32■□□□□ 0.84
CHD3-215ENST00000572750 CCDC24Q8N4L8 307 aa20.32■□□□□ 0.84
CHD3-215ENST00000572750 CNBD1Q8NA66 436 aa20.32■□□□□ 0.84
CHD3-215ENST00000572750 FAM177BA6PVY3 158 aa20.31■□□□□ 0.84
CHD3-215ENST00000572750 NBPF5PQ86XG9 351 aaPredicted RBP20.31■□□□□ 0.84
CHD3-215ENST00000572750 CHMP4AQ9BY43 222 aa20.31■□□□□ 0.84
CHD3-215ENST00000572750 NPHP1O15259 732 aa20.3■□□□□ 0.84
CHD3-215ENST00000572750 PLBD2Q8NHP8 589 aa20.3■□□□□ 0.84
CHD3-215ENST00000572750 ANKRD13DQ6ZTN6 518 aa20.29■□□□□ 0.84
CHD3-215ENST00000572750 G2E3Q7L622 706 aa20.29■□□□□ 0.84
CHD3-215ENST00000572750 SLC4A2P04920 1241 aa20.28■□□□□ 0.84
CHD3-215ENST00000572750 FSTL1Q12841 308 aa20.28■□□□□ 0.84
CHD3-215ENST00000572750 ZNF34Q8IZ26 560 aa20.28■□□□□ 0.84
CHD3-215ENST00000572750 TRMT2AQ8IZ69 625 aaKnown RBP20.28■□□□□ 0.84
CHD3-215ENST00000572750 ABCC12Q96J65 1359 aa20.28■□□□□ 0.84
CHD3-215ENST00000572750 IBTKQ9P2D0 1353 aaPredicted RBP20.28■□□□□ 0.84
CHD3-215ENST00000572750 CACNA1SQ13698 1873 aa20.28■□□□□ 0.84
CHD3-215ENST00000572750 ZBED9Q6R2W3 1325 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms