RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 PRKRIP1Q9H875 184 aaPredicted RBP20.63■□□□□ 0.89
CDH3-204ENST00000565453 CCDC146Q8IYE0 955 aa20.62■□□□□ 0.89
CDH3-204ENST00000565453 ZNF622Q969S3 477 aaKnown RBP eCLIP20.62■□□□□ 0.89
CDH3-204ENST00000565453 BABAM1Q9NWV8 329 aa20.62■□□□□ 0.89
CDH3-204ENST00000565453 TSPYL4Q9UJ04 414 aa20.62■□□□□ 0.89
CDH3-204ENST00000565453 NFKBIEO00221 500 aa20.61■□□□□ 0.89
CDH3-204ENST00000565453 LMOD3Q0VAK6 560 aa20.61■□□□□ 0.89
CDH3-204ENST00000565453 NBPF5PQ86XG9 351 aaPredicted RBP20.61■□□□□ 0.89
CDH3-204ENST00000565453 NMRK2Q9NPI5 230 aa20.61■□□□□ 0.89
CDH3-204ENST00000565453 NIP7Q9Y221 180 aaKnown RBP eCLIP20.61■□□□□ 0.89
CDH3-204ENST00000565453 RRP7AQ9Y3A4 280 aaKnown RBP20.61■□□□□ 0.89
CDH3-204ENST00000565453 SRGNP10124 158 aa20.6■□□□□ 0.89
CDH3-204ENST00000565453 STYK1Q6J9G0 422 aa20.6■□□□□ 0.89
CDH3-204ENST00000565453 TTLL7Q6ZT98 887 aa20.6■□□□□ 0.89
CDH3-204ENST00000565453 RUNDC1Q96C34 613 aa20.6■□□□□ 0.89
CDH3-204ENST00000565453 ARFGEF2Q9Y6D5 1785 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 ERBB4Q15303 1308 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 MAP3K15Q6ZN16 1313 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 KLRG2A4D1S0 409 aaPredicted RBP20.59■□□□□ 0.89
CDH3-204ENST00000565453 ERVV-1B6SEH8 477 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 NPHP1O15259 732 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 LMNB1P20700 586 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 NGEFQ8N5V2 710 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 ADAMTS8Q9UP79 889 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 TRIM35Q9UPQ4 493 aa20.59■□□□□ 0.89
CDH3-204ENST00000565453 ZC3H4Q9UPT8 1303 aaKnown RBP20.58■□□□□ 0.89
CDH3-204ENST00000565453 WDR43Q15061 677 aaKnown RBP eCLIP20.58■□□□□ 0.89
CDH3-204ENST00000565453 TPTE2Q6XPS3 522 aa20.58■□□□□ 0.89
CDH3-204ENST00000565453 LRP10Q7Z4F1 713 aa20.58■□□□□ 0.89
CDH3-204ENST00000565453 CNKSR1Q969H4 720 aa20.58■□□□□ 0.89
CDH3-204ENST00000565453 MASTLQ96GX5 879 aa20.58■□□□□ 0.89
CDH3-204ENST00000565453 FER1L6Q2WGJ9 1857 aa20.58■□□□□ 0.88
CDH3-204ENST00000565453 SLX4Q8IY92 1834 aa20.57■□□□□ 0.88
CDH3-204ENST00000565453 C21orf2O43822 256 aa20.57■□□□□ 0.88
CDH3-204ENST00000565453 MYL6BP14649 208 aa20.57■□□□□ 0.88
CDH3-204ENST00000565453 NUP98P52948 1817 aa20.57■□□□□ 0.88
CDH3-204ENST00000565453 HSPA6P17066 643 aa20.56■□□□□ 0.88
CDH3-204ENST00000565453 PDIA6Q15084 440 aa20.56■□□□□ 0.88
CDH3-204ENST00000565453 NEUROD2Q15784 382 aa20.56■□□□□ 0.88
CDH3-204ENST00000565453 ZNF219Q9P2Y4 722 aaPredicted RBP20.56■□□□□ 0.88
CDH3-204ENST00000565453 KDM2BQ8NHM5 1336 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 CHL1O00533 1208 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 TOMM70O94826 608 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 PRPF40BQ6NWY9 871 aaKnown RBP20.55■□□□□ 0.88
CDH3-204ENST00000565453 KIF6Q6ZMV9 814 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 CACNA1SQ13698 1873 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 TIAM2Q8IVF5 1701 aa20.55■□□□□ 0.88
CDH3-204ENST00000565453 CCDC88AQ3V6T2 1871 aa20.54■□□□□ 0.88
CDH3-204ENST00000565453 FAM177BA6PVY3 158 aa20.54■□□□□ 0.88
CDH3-204ENST00000565453 C7orf43Q8WVR3 580 aa20.54■□□□□ 0.88
CDH3-204ENST00000565453 ZBTB3Q9H5J0 574 aa20.54■□□□□ 0.88
CDH3-204ENST00000565453 TNRC6CQ9HCJ0 1690 aaKnown RBP20.54■□□□□ 0.88
CDH3-204ENST00000565453 LTBP3Q9NS15 1303 aa20.53■□□□□ 0.88
CDH3-204ENST00000565453 NPR1P16066 1061 aa20.53■□□□□ 0.88
CDH3-204ENST00000565453 PROSER3Q2NL68 480 aa20.53■□□□□ 0.88
CDH3-204ENST00000565453 ABCC12Q96J65 1359 aa20.53■□□□□ 0.88
CDH3-204ENST00000565453 IBTKQ9P2D0 1353 aaPredicted RBP20.53■□□□□ 0.88
CDH3-204ENST00000565453 UBN2Q6ZU65 1347 aa20.53■□□□□ 0.88
CDH3-204ENST00000565453 EIF2S2P20042 333 aaKnown RBP20.52■□□□□ 0.88
CDH3-204ENST00000565453 ZNF34Q8IZ26 560 aa20.52■□□□□ 0.88
CDH3-204ENST00000565453 KRT24Q2M2I5 525 aa20.51■□□□□ 0.87
CDH3-204ENST00000565453 GIGYF2Q6Y7W6 1299 aaKnown RBP20.51■□□□□ 0.87
CDH3-204ENST00000565453 NYXQ9GZU5 481 aa20.51■□□□□ 0.87
CDH3-204ENST00000565453 RRAGCQ9HB90 399 aa20.51■□□□□ 0.87
CDH3-204ENST00000565453 RIC1Q4ADV7 1423 aa20.51■□□□□ 0.87
CDH3-204ENST00000565453 GLTPD2A6NH11 291 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 ANXA1P04083 346 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 GPTP24298 496 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 CRY2Q49AN0 593 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 SOGA3Q5TF21 947 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 SUSD4Q5VX71 490 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 NUTM1Q86Y26 1132 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 RBM46Q8TBY0 533 aaKnown RBP20.5■□□□□ 0.87
CDH3-204ENST00000565453 TAOK3Q9H2K8 898 aa20.5■□□□□ 0.87
CDH3-204ENST00000565453 DICER1Q9UPY3 1922 aaKnown RBP20.5■□□□□ 0.87
CDH3-204ENST00000565453 ERFEQ4G0M1 354 aa20.49■□□□□ 0.87
CDH3-204ENST00000565453 NTSR2O95665 410 aa20.48■□□□□ 0.87
CDH3-204ENST00000565453 GTF2E1P29083 439 aaPredicted RBP20.48■□□□□ 0.87
CDH3-204ENST00000565453 ZEB1P37275 1124 aaPredicted RBP20.47■□□□□ 0.87
CDH3-204ENST00000565453 NECTIN2Q92692 538 aa20.47■□□□□ 0.87
CDH3-204ENST00000565453 LAS1LQ9Y4W2 734 aaKnown RBP20.47■□□□□ 0.87
CDH3-204ENST00000565453 CCDC93Q567U6 631 aa20.46■□□□□ 0.87
CDH3-204ENST00000565453 C16orf71Q8IYS4 520 aaPredicted RBP20.46■□□□□ 0.87
CDH3-204ENST00000565453 CFAP44Q96MT7 982 aa20.46■□□□□ 0.87
CDH3-204ENST00000565453 DDX21Q9NR30 783 aaKnown RBP eCLIP20.46■□□□□ 0.87
CDH3-204ENST00000565453 SNED1Q8TER0 1413 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 WDR90Q96KV7 1748 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 APAF1O14727 1248 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 ZNF853P0CG23 659 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 ALDH1B1P30837 517 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 PARP10Q53GL7 1025 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 OLFM4Q6UX06 510 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 COPS6Q7L5N1 327 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 XAGE3Q8WTP9 111 aa20.45■□□□□ 0.86
CDH3-204ENST00000565453 POTECB2RU33 542 aa20.44■□□□□ 0.86
CDH3-204ENST00000565453 HOXB7P09629 217 aa20.44■□□□□ 0.86
CDH3-204ENST00000565453 HOXA10P31260 410 aaPredicted RBP20.44■□□□□ 0.86
CDH3-204ENST00000565453 FSTL1Q12841 308 aa20.44■□□□□ 0.86
CDH3-204ENST00000565453 CCDC184Q52MB2 194 aa20.44■□□□□ 0.86
CDH3-204ENST00000565453 ANKRD36CQ5JPF3 1778 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms