RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 SETD1AO15047 1707 aaKnown RBP8.88□□□□□ -0.99
VPS35-204ENST00000563884 ABL2P42684 1182 aa8.88□□□□□ -0.99
VPS35-204ENST00000563884 PHTF2Q8N3S3 785 aa8.88□□□□□ -0.99
VPS35-204ENST00000563884 GDPD2Q9HCC8 539 aa8.88□□□□□ -0.99
VPS35-204ENST00000563884 HRH3Q9Y5N1 445 aa8.88□□□□□ -0.99
VPS35-204ENST00000563884 DNMT3AQ9Y6K1 912 aaPredicted RBP8.88□□□□□ -0.99
VPS35-204ENST00000563884 MROH2AA6NES4 1674 aa8.88□□□□□ -0.99
VPS35-204ENST00000563884 CSB-PGBD3P0DP91 1061 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 C4orf17Q53FE4 359 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 GPAT2Q6NUI2 795 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 PODNQ7Z5L7 613 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 PGBD3Q8N328 593 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 SIRT1Q96EB6 747 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 FHDC1Q9C0D6 1143 aaPredicted RBP8.87□□□□□ -0.99
VPS35-204ENST00000563884 POLR1AO95602 1720 aaPredicted RBP8.87□□□□□ -0.99
VPS35-204ENST00000563884 ATP10AO60312 1499 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 PTPRKQ15262 1439 aa8.87□□□□□ -0.99
VPS35-204ENST00000563884 PHF20L1A8MW92 1017 aa8.86□□□□□ -0.99
VPS35-204ENST00000563884 STAU1O95793 577 aaKnown RBP8.86□□□□□ -0.99
VPS35-204ENST00000563884 CFHR5Q9BXR6 569 aa8.86□□□□□ -0.99
VPS35-204ENST00000563884 ETNK1Q9HBU6 452 aa8.86□□□□□ -0.99
VPS35-204ENST00000563884 PHF24Q9UPV7 400 aa8.86□□□□□ -0.99
VPS35-204ENST00000563884 TRAPPC8Q9Y2L5 1435 aa8.86□□□□□ -0.99
VPS35-204ENST00000563884 CNTNAP5Q8WYK1 1306 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 ZNF335Q9H4Z2 1342 aaPredicted RBP8.85□□□□□ -0.99
VPS35-204ENST00000563884 PLA2R1Q13018 1463 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 MAP2K3P46734 347 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 PIP4K2BP78356 416 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 TLR1Q15399 786 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 RUBCNLQ9H714 662 aa8.85□□□□□ -0.99
VPS35-204ENST00000563884 THBS1P07996 1170 aa8.84□□□□□ -0.99
VPS35-204ENST00000563884 MSX1P28360 303 aa8.84□□□□□ -0.99
VPS35-204ENST00000563884 SUZ12Q15022 739 aaKnown RBP8.84□□□□□ -0.99
VPS35-204ENST00000563884 EFHC2Q5JST6 749 aa8.84□□□□□ -0.99
VPS35-204ENST00000563884 BEND7Q8N7W2 519 aaPredicted RBP8.84□□□□□ -0.99
VPS35-204ENST00000563884 RHBDD1Q8TEB9 315 aa8.84□□□□□ -0.99
VPS35-204ENST00000563884 REREQ9P2R6 1566 aa8.84□□□□□ -0.99
VPS35-204ENST00000563884 MYO3AQ8NEV4 1616 aa8.83□□□□□ -1
VPS35-204ENST00000563884 RAPGEF6Q8TEU7 1601 aa8.83□□□□□ -1
VPS35-204ENST00000563884 ATP10BO94823 1461 aa8.83□□□□□ -1
VPS35-204ENST00000563884 RAPGEF2Q9Y4G8 1499 aa8.83□□□□□ -1
VPS35-204ENST00000563884 CEBPAP49715 358 aaPredicted RBP8.83□□□□□ -1
VPS35-204ENST00000563884 SEMA3FQ13275 785 aa8.83□□□□□ -1
VPS35-204ENST00000563884 LBRQ14739 615 aaKnown RBP8.83□□□□□ -1
VPS35-204ENST00000563884 WASHC4Q2M389 1173 aa8.83□□□□□ -1
VPS35-204ENST00000563884 OXCT2Q9BYC2 517 aaPredicted RBP8.83□□□□□ -1
VPS35-204ENST00000563884 CNTLNQ9NXG0 1405 aa8.82□□□□□ -1
VPS35-204ENST00000563884 FOXK2Q01167 660 aa8.82□□□□□ -1
VPS35-204ENST00000563884 FLIIQ13045 1269 aa8.82□□□□□ -1
VPS35-204ENST00000563884 PPARGC1BQ86YN6 1023 aaKnown RBP8.82□□□□□ -1
VPS35-204ENST00000563884 LRRC4BQ9NT99 713 aa8.82□□□□□ -1
VPS35-204ENST00000563884 CHIC2Q9UKJ5 165 aa8.82□□□□□ -1
VPS35-204ENST00000563884 RNF17Q9BXT8 1623 aaKnown RBP8.82□□□□□ -1
VPS35-204ENST00000563884 NPATQ14207 1427 aa8.81□□□□□ -1
VPS35-204ENST00000563884 AGLP35573 1532 aa8.81□□□□□ -1
VPS35-204ENST00000563884 OIP5O43482 229 aa8.81□□□□□ -1
VPS35-204ENST00000563884 IGHA1P01876 353 aa8.81□□□□□ -1
VPS35-204ENST00000563884 PLA2G4AP47712 749 aa8.81□□□□□ -1
VPS35-204ENST00000563884 GDF10P55107 478 aa8.81□□□□□ -1
VPS35-204ENST00000563884 MAP7D1Q3KQU3 841 aa8.81□□□□□ -1
VPS35-204ENST00000563884 PLPP7Q8NBV4 271 aa8.81□□□□□ -1
VPS35-204ENST00000563884 MYO5CQ9NQX4 1742 aa8.8□□□□□ -1
VPS35-204ENST00000563884 TBC1D9Q6ZT07 1266 aa8.8□□□□□ -1
VPS35-204ENST00000563884 KLRG1Q96E93 195 aa8.8□□□□□ -1
VPS35-204ENST00000563884 COG6Q9Y2V7 657 aa8.8□□□□□ -1
VPS35-204ENST00000563884 TCOF1Q13428 1488 aaKnown RBP8.8□□□□□ -1
VPS35-204ENST00000563884 SYNMO15061 1565 aa8.79□□□□□ -1
VPS35-204ENST00000563884 CEP170BQ9Y4F5 1589 aaPredicted RBP8.79□□□□□ -1
VPS35-204ENST00000563884 INHAP05111 366 aa8.79□□□□□ -1
VPS35-204ENST00000563884 SCNN1DP51172 638 aa8.79□□□□□ -1
VPS35-204ENST00000563884 ATXN7L1Q9ULK2 861 aaPredicted RBP8.79□□□□□ -1
VPS35-204ENST00000563884 BMP4P12644 408 aa8.78□□□□□ -1
VPS35-204ENST00000563884 SOX11P35716 441 aa8.78□□□□□ -1
VPS35-204ENST00000563884 UBAP2LQ14157 1087 aaKnown RBP8.78□□□□□ -1
VPS35-204ENST00000563884 GALNT6Q8NCL4 622 aa8.78□□□□□ -1
VPS35-204ENST00000563884 AIDAQ96BJ3 306 aa8.78□□□□□ -1
VPS35-204ENST00000563884 ABHD17AQ96GS6 310 aa8.78□□□□□ -1
VPS35-204ENST00000563884 DCAF5Q96JK2 942 aa8.78□□□□□ -1
VPS35-204ENST00000563884 NIFKQ9BYG3 293 aaKnown RBP8.78□□□□□ -1
VPS35-204ENST00000563884 GDF2Q9UK05 429 aaPredicted RBP8.78□□□□□ -1
VPS35-204ENST00000563884 SERTAD1Q9UHV2 236 aa8.77□□□□□ -1.01
VPS35-204ENST00000563884 DIP2CQ9Y2E4 1556 aa8.77□□□□□ -1.01
VPS35-204ENST00000563884 ZNF518AQ6AHZ1 1483 aa8.77□□□□□ -1.01
VPS35-204ENST00000563884 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS35-204ENST00000563884 FGFR3P22607 806 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 SMTNP53814 917 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 EDARADDQ8WWZ3 215 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 CRISPLD1Q9H336 500 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 RRAGCQ9HB90 399 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 KDM5CP41229 1560 aa8.76□□□□□ -1.01
VPS35-204ENST00000563884 LOC100996750A0A140TA64 210 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 SHISA8B8ZZ34 492 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 BNIP3LO60238 219 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 PLA2G4EQ3MJ16 856 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 FIGNL1Q6PIW4 674 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 C1orf229Q6ZS94 237 aaPredicted RBP8.75□□□□□ -1.01
VPS35-204ENST00000563884 GOLGA6L1Q8N7Z2 621 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 POM121Q96HA1 1249 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 KRTAP4-6Q9BYQ5 205 aa8.75□□□□□ -1.01
VPS35-204ENST00000563884 SHANK2Q9UPX8 1470 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 175.6 ms