RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 BRIP1Q9BX63 1249 aa18.47■□□□□ 0.55
SMPD3-204ENST00000563396 RRP7AQ9Y3A4 280 aaKnown RBP18.47■□□□□ 0.55
SMPD3-204ENST00000563396 IBTKQ9P2D0 1353 aaPredicted RBP18.46■□□□□ 0.55
SMPD3-204ENST00000563396 LRP10Q7Z4F1 713 aa18.46■□□□□ 0.55
SMPD3-204ENST00000563396 RIC1Q4ADV7 1423 aa18.46■□□□□ 0.55
SMPD3-204ENST00000563396 DICER1Q9UPY3 1922 aaKnown RBP18.45■□□□□ 0.54
SMPD3-204ENST00000563396 CCDC88AQ3V6T2 1871 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 ERVV-1B6SEH8 477 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 CHL1O00533 1208 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 PDE6BP35913 854 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 C2CD5Q86YS7 1000 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 MAP3K15Q6ZN16 1313 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 SLX4Q8IY92 1834 aa18.44■□□□□ 0.54
SMPD3-204ENST00000563396 ZNF316A6NFI3 1004 aaPredicted RBP18.43■□□□□ 0.54
SMPD3-204ENST00000563396 H0YIN7 160 aa18.43■□□□□ 0.54
SMPD3-204ENST00000563396 ST5P78524 1137 aa18.43■□□□□ 0.54
SMPD3-204ENST00000563396 ARHGAP27Q6ZUM4 889 aa18.43■□□□□ 0.54
SMPD3-204ENST00000563396 TTLL6Q8N841 843 aa18.43■□□□□ 0.54
SMPD3-204ENST00000563396 NEUROD2Q15784 382 aa18.42■□□□□ 0.54
SMPD3-204ENST00000563396 HLFQ16534 295 aa18.42■□□□□ 0.54
SMPD3-204ENST00000563396 NIP7Q9Y221 180 aaKnown RBP eCLIP18.42■□□□□ 0.54
SMPD3-204ENST00000563396 C1QTNF8P60827 252 aa18.41■□□□□ 0.54
SMPD3-204ENST00000563396 PDIA6Q15084 440 aa18.41■□□□□ 0.54
SMPD3-204ENST00000563396 TTLL7Q6ZT98 887 aa18.41■□□□□ 0.54
SMPD3-204ENST00000563396 NBPF5PQ86XG9 351 aaPredicted RBP18.41■□□□□ 0.54
SMPD3-204ENST00000563396 GPBP1L1Q9HC44 474 aaPredicted RBP18.41■□□□□ 0.54
SMPD3-204ENST00000563396 KLRG2A4D1S0 409 aaPredicted RBP18.4■□□□□ 0.54
SMPD3-204ENST00000563396 HOXB7P09629 217 aa18.4■□□□□ 0.54
SMPD3-204ENST00000563396 SRGNP10124 158 aa18.4■□□□□ 0.54
SMPD3-204ENST00000563396 KIF6Q6ZMV9 814 aa18.4■□□□□ 0.54
SMPD3-204ENST00000563396 CFAP44Q96MT7 982 aa18.4■□□□□ 0.54
SMPD3-204ENST00000563396 ZC3H4Q9UPT8 1303 aaKnown RBP18.4■□□□□ 0.54
SMPD3-204ENST00000563396 MYL6BP14649 208 aa18.39■□□□□ 0.53
SMPD3-204ENST00000563396 STYK1Q6J9G0 422 aa18.39■□□□□ 0.53
SMPD3-204ENST00000563396 CCDC24Q8N4L8 307 aa18.39■□□□□ 0.53
SMPD3-204ENST00000563396 UBN2Q6ZU65 1347 aa18.39■□□□□ 0.53
SMPD3-204ENST00000563396 ABCC12Q96J65 1359 aa18.39■□□□□ 0.53
SMPD3-204ENST00000563396 LAMB2P55268 1798 aa18.38■□□□□ 0.53
SMPD3-204ENST00000563396 APAF1O14727 1248 aa18.38■□□□□ 0.53
SMPD3-204ENST00000563396 ZNF853P0CG23 659 aa18.38■□□□□ 0.53
SMPD3-204ENST00000563396 CCDC184Q52MB2 194 aa18.38■□□□□ 0.53
SMPD3-204ENST00000563396 C9orf131Q5VYM1 1079 aa18.38■□□□□ 0.53
SMPD3-204ENST00000563396 NFKBIEO00221 500 aa18.37■□□□□ 0.53
SMPD3-204ENST00000563396 NPHP1O15259 732 aa18.37■□□□□ 0.53
SMPD3-204ENST00000563396 KRT24Q2M2I5 525 aa18.37■□□□□ 0.53
SMPD3-204ENST00000563396 PROSER3Q2NL68 480 aa18.37■□□□□ 0.53
SMPD3-204ENST00000563396 TPTE2Q6XPS3 522 aa18.37■□□□□ 0.53
SMPD3-204ENST00000563396 GIGYF2Q6Y7W6 1299 aaKnown RBP18.37■□□□□ 0.53
SMPD3-204ENST00000563396 PRELPP51888 382 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 RASSF7Q02833 373 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 ZNF34Q8IZ26 560 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 CNKSR1Q969H4 720 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 MASTLQ96GX5 879 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 NYXQ9GZU5 481 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 ZBTB3Q9H5J0 574 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 LTBP3Q9NS15 1303 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 IFT57Q9NWB7 429 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 RNF181Q9P0P0 153 aa18.36■□□□□ 0.53
SMPD3-204ENST00000563396 SNED1Q8TER0 1413 aa18.35■□□□□ 0.53
SMPD3-204ENST00000563396 KIF3CO14782 793 aa18.35■□□□□ 0.53
SMPD3-204ENST00000563396 EIF2S2P20042 333 aaKnown RBP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 CALD1Q05682 793 aaKnown RBP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 PRPF40BQ6NWY9 871 aaKnown RBP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
SMPD3-204ENST00000563396 ZNF526Q8TF50 670 aaPredicted RBP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 ZNF622Q969S3 477 aaKnown RBP eCLIP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 DDX21Q9NR30 783 aaKnown RBP eCLIP18.35■□□□□ 0.53
SMPD3-204ENST00000563396 MBIPQ9NS73 344 aa18.35■□□□□ 0.53
SMPD3-204ENST00000563396 NPR1P16066 1061 aa18.34■□□□□ 0.53
SMPD3-204ENST00000563396 LMNB1P20700 586 aa18.34■□□□□ 0.53
SMPD3-204ENST00000563396 CRY2Q49AN0 593 aa18.34■□□□□ 0.53
SMPD3-204ENST00000563396 DDX60Q8IY21 1712 aaKnown RBP18.34■□□□□ 0.53
SMPD3-204ENST00000563396 RNF123Q5XPI4 1314 aa18.33■□□□□ 0.53
SMPD3-204ENST00000563396 NTSR2O95665 410 aa18.33■□□□□ 0.52
SMPD3-204ENST00000563396 ANXA1P04083 346 aa18.33■□□□□ 0.52
SMPD3-204ENST00000563396 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.52
SMPD3-204ENST00000563396 WDR90Q96KV7 1748 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 ANP32CO43423 234 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 GNAI1P63096 354 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 CCDC27Q2M243 656 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
SMPD3-204ENST00000563396 PARP10Q53GL7 1025 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 SOGA3Q5TF21 947 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 HDGFL1Q5TGJ6 251 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 CHPF2Q9P2E5 772 aa18.32■□□□□ 0.52
SMPD3-204ENST00000563396 C21orf2O43822 256 aa18.31■□□□□ 0.52
SMPD3-204ENST00000563396 GPTP24298 496 aa18.31■□□□□ 0.52
SMPD3-204ENST00000563396 C7orf43Q8WVR3 580 aa18.31■□□□□ 0.52
SMPD3-204ENST00000563396 FAM177BA6PVY3 158 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 SUSD4Q5VX71 490 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 COPS6Q7L5N1 327 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 NUTM1Q86Y26 1132 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 XAGE3Q8WTP9 111 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 MRS2Q9HD23 443 aa18.3■□□□□ 0.52
SMPD3-204ENST00000563396 KDM2BQ8NHM5 1336 aa18.29■□□□□ 0.52
SMPD3-204ENST00000563396 ERFEQ4G0M1 354 aa18.29■□□□□ 0.52
SMPD3-204ENST00000563396 HSP90AB3PQ58FF7 597 aa18.29■□□□□ 0.52
SMPD3-204ENST00000563396 DUSP27Q5VZP5 1158 aa18.29■□□□□ 0.52
SMPD3-204ENST00000563396 NECTIN2Q92692 538 aa18.29■□□□□ 0.52
SMPD3-204ENST00000563396 TAOK3Q9H2K8 898 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms