RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FKBP5Q13451 457 aaPredicted RBP6.43□□□□□ -1.38
VPS35-203ENST00000562420 SH3PXD2AQ5TCZ1 1133 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 IER5Q5VY09 327 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 ALDH16A1Q8IZ83 802 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 VWA5B2Q8N398 1253 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 WHAMMQ8TF30 809 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 PHACTR1Q9C0D0 580 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 RUBCNLQ9H714 662 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 NDFIP2Q9NV92 336 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 ANKIB1Q9P2G1 1089 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 PHF24Q9UPV7 400 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 PARP3Q9Y6F1 533 aa6.43□□□□□ -1.38
VPS35-203ENST00000562420 A0A1W2PNR3 127 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 CDC14CA4D256 554 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 PRMT3O60678 531 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 ATP2B4P23634 1241 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 LAMC2Q13753 1193 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 ZNF385CQ66K41 422 aaPredicted RBP6.42□□□□□ -1.38
VPS35-203ENST00000562420 RHPN1Q8TCX5 695 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 VTI1AQ96AJ9 217 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 TRERF1Q96PN7 1200 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 SLAIN2Q9P270 581 aa6.42□□□□□ -1.38
VPS35-203ENST00000562420 ATXN7L1Q9ULK2 861 aaPredicted RBP6.42□□□□□ -1.38
VPS35-203ENST00000562420 SSFA2P28290 1259 aa6.41□□□□□ -1.38
VPS35-203ENST00000562420 ARSJQ5FYB0 599 aaPredicted RBP6.41□□□□□ -1.38
VPS35-203ENST00000562420 BICDL1Q6ZP65 573 aa6.41□□□□□ -1.38
VPS35-203ENST00000562420 SVOPQ8N4V2 548 aa6.41□□□□□ -1.38
VPS35-203ENST00000562420 RETREG2Q8NC44 543 aa6.41□□□□□ -1.38
VPS35-203ENST00000562420 CHMP7Q8WUX9 453 aaPredicted RBP6.41□□□□□ -1.38
VPS35-203ENST00000562420 PCDHGC4Q9Y5F7 938 aa6.41□□□□□ -1.38
VPS35-203ENST00000562420 FAM182BQ5T319 152 aa6.4□□□□□ -1.38
VPS35-203ENST00000562420 GTPBP3Q969Y2 492 aaKnown RBP6.4□□□□□ -1.38
VPS35-203ENST00000562420 PRIMPOLQ96LW4 560 aa6.4□□□□□ -1.38
VPS35-203ENST00000562420 QTRT2Q9H974 415 aaKnown RBP6.4□□□□□ -1.38
VPS35-203ENST00000562420 TGFBR3LH3BV60 316 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 RNF225M0QZC1 329 aaPredicted RBP6.39□□□□□ -1.39
VPS35-203ENST00000562420 EFSO43281 561 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 IRS1P35568 1242 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 GAS6Q14393 721 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 GPAT2Q6NUI2 795 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 ZCCHC2Q9C0B9 1178 aaKnown RBP6.39□□□□□ -1.39
VPS35-203ENST00000562420 MBIPQ9NS73 344 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 HCN4Q9Y3Q4 1203 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 GJA3Q9Y6H8 435 aa6.39□□□□□ -1.39
VPS35-203ENST00000562420 ATXN7O15265 892 aaPredicted RBP6.38□□□□□ -1.39
VPS35-203ENST00000562420 KCNQ4P56696 695 aa6.38□□□□□ -1.39
VPS35-203ENST00000562420 SRSF11Q05519 484 aaKnown RBP6.38□□□□□ -1.39
VPS35-203ENST00000562420 C16orf46Q6P387 395 aa6.38□□□□□ -1.39
VPS35-203ENST00000562420 SUSD3Q96L08 255 aa6.38□□□□□ -1.39
VPS35-203ENST00000562420 C11orf16Q9NQ32 467 aa6.38□□□□□ -1.39
VPS35-203ENST00000562420 NSFL1CQ9UNZ2 370 aaKnown RBP6.38□□□□□ -1.39
VPS35-203ENST00000562420 MTMR7Q9Y216 660 aa6.38□□□□□ -1.39
VPS35-203ENST00000562420 BNIP3LO60238 219 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 LGR5O75473 907 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 SLURP2P0DP57 97 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 TNP2Q05952 138 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 TYRO3Q06418 890 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 C11orf91Q3C1V1 193 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 NEUROD4Q9HD90 331 aa6.37□□□□□ -1.39
VPS35-203ENST00000562420 ARHGEF15O94989 841 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 MAP2K3P46734 347 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 MARSP56192 900 aaKnown RBP6.36□□□□□ -1.39
VPS35-203ENST00000562420 PHLDB3Q6NSJ2 640 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 LRRC69Q6ZNQ3 347 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 NGLY1Q96IV0 654 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 EFCC1Q9HA90 598 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 AVENQ9NQS1 362 aaPredicted RBP6.36□□□□□ -1.39
VPS35-203ENST00000562420 LRRC4BQ9NT99 713 aa6.36□□□□□ -1.39
VPS35-203ENST00000562420 DMGDHQ9UI17 866 aaKnown RBP6.36□□□□□ -1.39
VPS35-203ENST00000562420 GPR25O00155 361 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 MAPTP10636 758 aaKnown RBP6.35□□□□□ -1.39
VPS35-203ENST00000562420 MX2P20592 715 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 FGFR3P22607 806 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 COX20Q5RI15 118 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 BTLAQ7Z6A9 289 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 ABHD17AQ96GS6 310 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 HSH2DQ96JZ2 352 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 LRFN2Q9ULH4 789 aa6.35□□□□□ -1.39
VPS35-203ENST00000562420 BRD1O95696 1058 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 BRD2P25440 801 aaKnown RBP6.34□□□□□ -1.39
VPS35-203ENST00000562420 DGKZQ13574 1117 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 ZNF280CQ8ND82 737 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 HELQQ8TDG4 1101 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 MARK1Q9P0L2 795 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 BCS1LQ9Y276 419 aa6.34□□□□□ -1.39
VPS35-203ENST00000562420 DCDC2BA2VCK2 349 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 TNFRSF10BO14763 440 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 KHNYNO15037 678 aaKnown RBP6.33□□□□□ -1.4
VPS35-203ENST00000562420 EPB42P16452 691 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 LYPD4Q6UWN0 246 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 ABTB2Q8N961 1025 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 KLRG1Q96E93 195 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 MKNK1Q9BUB5 465 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 TRAIPQ9BWF2 469 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 BRD7Q9NPI1 651 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 EGFL7Q9UHF1 273 aa6.33□□□□□ -1.4
VPS35-203ENST00000562420 DNMT3AQ9Y6K1 912 aaPredicted RBP6.33□□□□□ -1.4
VPS35-203ENST00000562420 IGF1RP08069 1367 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 ADAMTS2O95450 1211 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 ARAFP10398 606 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms