RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 COL14A1Q05707 1796 aaKnown RBP8.37□□□□□ -1.07
CAPN3-210ENST00000561817 PKD1L3Q7Z443 1732 aa8.37□□□□□ -1.07
CAPN3-210ENST00000561817 NRAPQ86VF7 1730 aa8.37□□□□□ -1.07
CAPN3-210ENST00000561817 RGS12O14924 1447 aa8.37□□□□□ -1.07
CAPN3-210ENST00000561817 VIRMAQ69YN4 1812 aaKnown RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 SPATA31A6Q5VVP1 1343 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 KIF16BQ96L93 1317 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 EVI5O60447 810 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 AAMPQ13685 434 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 MVPQ14764 893 aaKnown RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 AMOTQ4VCS5 1084 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 PLEKHO1Q53GL0 409 aaPredicted RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 AKAP4Q5JQC9 854 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 DZIP1LQ8IYY4 767 aaKnown RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 RTF1Q92541 710 aaKnown RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 LGR6Q9HBX8 967 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 ANO8Q9HCE9 1232 aaPredicted RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 MIS18AQ9NYP9 233 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 NWD2Q9ULI1 1742 aa8.36□□□□□ -1.07
CAPN3-210ENST00000561817 COL5A2P05997 1499 aaPredicted RBP8.36□□□□□ -1.07
CAPN3-210ENST00000561817 ABCC4O15439 1325 aa8.35□□□□□ -1.07
CAPN3-210ENST00000561817 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.35□□□□□ -1.07
CAPN3-210ENST00000561817 ELL2O00472 640 aaPredicted RBP8.35□□□□□ -1.07
CAPN3-210ENST00000561817 MAP3K9P80192 1104 aa8.35□□□□□ -1.07
CAPN3-210ENST00000561817 TAF7Q15545 349 aaPredicted RBP8.35□□□□□ -1.07
CAPN3-210ENST00000561817 ZNF530Q6P9A1 599 aaPredicted RBP8.35□□□□□ -1.07
CAPN3-210ENST00000561817 CLUAP1Q96AJ1 413 aa8.35□□□□□ -1.07
CAPN3-210ENST00000561817 PCDHB15Q9Y5E8 787 aa8.35□□□□□ -1.07
CAPN3-210ENST00000561817 SOS1Q07889 1333 aaPredicted RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 WDR17Q8IZU2 1322 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 WNK3Q9BYP7 1800 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 IPO8O15397 1037 aaKnown RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 RNMTO43148 476 aaKnown RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 IGHDP01880 384 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 MS4A1P11836 297 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 PTPREP23469 700 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 CANXP27824 592 aaKnown RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 CENPQQ7L2Z9 268 aaPredicted RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 TMEM57Q8N5G2 664 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 ZMYND15Q9H091 742 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 TSPYL4Q9UJ04 414 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 KDM6AO15550 1401 aaPredicted RBP8.34□□□□□ -1.07
CAPN3-210ENST00000561817 HEG1Q9ULI3 1381 aa8.34□□□□□ -1.07
CAPN3-210ENST00000561817 MRC1P22897 1456 aa8.33□□□□□ -1.08
CAPN3-210ENST00000561817 SCN11AQ9UI33 1791 aa8.33□□□□□ -1.08
CAPN3-210ENST00000561817 TCERG1O14776 1098 aaKnown RBP8.33□□□□□ -1.08
CAPN3-210ENST00000561817 HMGB1P09429 215 aaKnown RBP8.33□□□□□ -1.08
CAPN3-210ENST00000561817 ZBTB40Q9NUA8 1239 aa8.33□□□□□ -1.08
CAPN3-210ENST00000561817 NLRP2Q9NX02 1062 aa8.33□□□□□ -1.08
CAPN3-210ENST00000561817 VPS9D1Q9Y2B5 631 aa8.33□□□□□ -1.08
CAPN3-210ENST00000561817 AFF2P51816 1311 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 SHANK3Q9BYB0 1731 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 PARP4Q9UKK3 1724 aaKnown RBP8.32□□□□□ -1.08
CAPN3-210ENST00000561817 KCNQ3O43525 872 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 PHKG2P15735 406 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 EIF4A1P60842 406 aaKnown RBP8.32□□□□□ -1.08
CAPN3-210ENST00000561817 MPRIPQ6WCQ1 1025 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 ZDHHC16Q969W1 377 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 KCTD12Q96CX2 325 aaKnown RBP8.32□□□□□ -1.08
CAPN3-210ENST00000561817 NGLY1Q96IV0 654 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 SLC4A5Q9BY07 1137 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 PRDM11Q9NQV5 511 aa8.32□□□□□ -1.08
CAPN3-210ENST00000561817 CACNA1FO60840 1977 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 ZBTB7BO15156 539 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-210ENST00000561817 CYP27B1O15528 508 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 TATP17735 454 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-210ENST00000561817 SKAP1Q86WV1 359 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 FTSJ3Q8IY81 847 aaKnown RBP8.31□□□□□ -1.08
CAPN3-210ENST00000561817 RAPGEF4Q8WZA2 1011 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 CARD10Q9BWT7 1032 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 API5Q9BZZ5 524 aaKnown RBP8.31□□□□□ -1.08
CAPN3-210ENST00000561817 EMILIN3Q9NT22 766 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 DDX19BQ9UMR2 479 aa8.31□□□□□ -1.08
CAPN3-210ENST00000561817 IGSF3O75054 1194 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 HOXB7P09629 217 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 C1orf141Q5JVX7 400 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 INTS3Q68E01 1043 aaKnown RBP8.3□□□□□ -1.08
CAPN3-210ENST00000561817 G2E3Q7L622 706 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 PLA2G2EQ9NZK7 142 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 BRWD3Q6RI45 1802 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 GLI3P10071 1580 aa8.3□□□□□ -1.08
CAPN3-210ENST00000561817 N4BP2Q86UW6 1770 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-210ENST00000561817 PTPRCP08575 1304 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 DISP2A7MBM2 1401 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 A0A0G2JS52 829 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 CSB-PGBD3P0DP91 1061 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 CDK11BP21127 795 aaKnown RBP8.29□□□□□ -1.08
CAPN3-210ENST00000561817 HDAC1Q13547 482 aaPredicted RBP8.29□□□□□ -1.08
CAPN3-210ENST00000561817 LARP1Q6PKG0 1096 aaKnown RBP8.29□□□□□ -1.08
CAPN3-210ENST00000561817 ITPRIPQ8IWB1 547 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 ADAM33Q9BZ11 813 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 STRN4Q9NRL3 753 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 USP21Q9UK80 565 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 SPG7Q9UQ90 795 aa8.29□□□□□ -1.08
CAPN3-210ENST00000561817 BTBD11A6QL63 1104 aa8.28□□□□□ -1.08
CAPN3-210ENST00000561817 TEFQ10587 303 aa8.28□□□□□ -1.08
CAPN3-210ENST00000561817 CCDC30Q5VVM6 783 aa8.28□□□□□ -1.08
CAPN3-210ENST00000561817 IFNL2Q8IZJ0 200 aa8.28□□□□□ -1.08
CAPN3-210ENST00000561817 ZBED2Q9BTP6 218 aa8.28□□□□□ -1.08
CAPN3-210ENST00000561817 SLC52A2Q9HAB3 445 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms