RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CCDC88AQ3V6T2 1871 aa20.49■□□□□ 0.87
VPS39-203ENST00000561797 GOLGB1Q14789 3259 aaKnown RBP20.49■□□□□ 0.87
VPS39-203ENST00000561797 SBF1O95248 1867 aa20.48■□□□□ 0.87
VPS39-203ENST00000561797 C2CD5Q86YS7 1000 aa20.48■□□□□ 0.87
VPS39-203ENST00000561797 CHL1O00533 1208 aa20.47■□□□□ 0.87
VPS39-203ENST00000561797 HLFQ16534 295 aa20.47■□□□□ 0.87
VPS39-203ENST00000561797 CNBD1Q8NA66 436 aa20.47■□□□□ 0.87
VPS39-203ENST00000561797 H0YIN7 160 aa20.46■□□□□ 0.87
VPS39-203ENST00000561797 TTLL7Q6ZT98 887 aa20.46■□□□□ 0.87
VPS39-203ENST00000561797 NECTIN2Q92692 538 aa20.46■□□□□ 0.87
VPS39-203ENST00000561797 NIP7Q9Y221 180 aaKnown RBP eCLIP20.46■□□□□ 0.87
VPS39-203ENST00000561797 FAM177BA6PVY3 158 aa20.45■□□□□ 0.86
VPS39-203ENST00000561797 KRT24Q2M2I5 525 aa20.45■□□□□ 0.86
VPS39-203ENST00000561797 NBPF5PQ86XG9 351 aaPredicted RBP20.45■□□□□ 0.86
VPS39-203ENST00000561797 BRIP1Q9BX63 1249 aa20.45■□□□□ 0.86
VPS39-203ENST00000561797 MRS2Q9HD23 443 aa20.45■□□□□ 0.86
VPS39-203ENST00000561797 ATP10DQ9P241 1426 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 SENP3-EIF4A1A0A087X0R7 540 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 PDE6BP35913 854 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 ST5P78524 1137 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 KIF6Q6ZMV9 814 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 ERBB4Q15303 1308 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 MAP3K15Q6ZN16 1313 aa20.44■□□□□ 0.86
VPS39-203ENST00000561797 ANXA1P04083 346 aa20.43■□□□□ 0.86
VPS39-203ENST00000561797 ZNF622Q969S3 477 aaKnown RBP eCLIP20.43■□□□□ 0.86
VPS39-203ENST00000561797 ZBTB3Q9H5J0 574 aa20.43■□□□□ 0.86
VPS39-203ENST00000561797 RGL2O15211 777 aa20.42■□□□□ 0.86
VPS39-203ENST00000561797 PROSER3Q2NL68 480 aa20.42■□□□□ 0.86
VPS39-203ENST00000561797 TTLL6Q8N841 843 aa20.42■□□□□ 0.86
VPS39-203ENST00000561797 ZNF526Q8TF50 670 aaPredicted RBP20.42■□□□□ 0.86
VPS39-203ENST00000561797 CFAP44Q96MT7 982 aa20.42■□□□□ 0.86
VPS39-203ENST00000561797 ANKRD36CQ5JPF3 1778 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 ARFGEF2Q9Y6D5 1785 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 SLX4Q8IY92 1834 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 ERVV-1B6SEH8 477 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 PDIA6Q15084 440 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 ADCY9O60503 1353 aa20.41■□□□□ 0.86
VPS39-203ENST00000561797 TPTE2Q6XPS3 522 aa20.4■□□□□ 0.86
VPS39-203ENST00000561797 MBIPQ9NS73 344 aa20.4■□□□□ 0.86
VPS39-203ENST00000561797 PDZRN3Q9UPQ7 1066 aa20.4■□□□□ 0.86
VPS39-203ENST00000561797 GPTP24298 496 aa20.39■□□□□ 0.85
VPS39-203ENST00000561797 GTF2E1P29083 439 aaPredicted RBP20.38■□□□□ 0.85
VPS39-203ENST00000561797 GNAI1P63096 354 aa20.38■□□□□ 0.85
VPS39-203ENST00000561797 CALD1Q05682 793 aaKnown RBP20.38■□□□□ 0.85
VPS39-203ENST00000561797 AIMP1Q12904 312 aaKnown RBP20.38■□□□□ 0.85
VPS39-203ENST00000561797 LRP10Q7Z4F1 713 aa20.38■□□□□ 0.85
VPS39-203ENST00000561797 ZNF219Q9P2Y4 722 aaPredicted RBP20.38■□□□□ 0.85
VPS39-203ENST00000561797 FER1L6Q2WGJ9 1857 aa20.37■□□□□ 0.85
VPS39-203ENST00000561797 ZNF853P0CG23 659 aa20.37■□□□□ 0.85
VPS39-203ENST00000561797 C9orf131Q5VYM1 1079 aa20.37■□□□□ 0.85
VPS39-203ENST00000561797 GPBP1L1Q9HC44 474 aaPredicted RBP20.37■□□□□ 0.85
VPS39-203ENST00000561797 IFT57Q9NWB7 429 aa20.37■□□□□ 0.85
VPS39-203ENST00000561797 TNRC6CQ9HCJ0 1690 aaKnown RBP20.37■□□□□ 0.85
VPS39-203ENST00000561797 SRGNP10124 158 aa20.36■□□□□ 0.85
VPS39-203ENST00000561797 HDGFL1Q5TGJ6 251 aa20.36■□□□□ 0.85
VPS39-203ENST00000561797 DUSP27Q5VZP5 1158 aa20.36■□□□□ 0.85
VPS39-203ENST00000561797 GIGYF2Q6Y7W6 1299 aaKnown RBP20.36■□□□□ 0.85
VPS39-203ENST00000561797 COPS6Q7L5N1 327 aa20.36■□□□□ 0.85
VPS39-203ENST00000561797 DDX21Q9NR30 783 aaKnown RBP eCLIP20.36■□□□□ 0.85
VPS39-203ENST00000561797 CHPF2Q9P2E5 772 aa20.36■□□□□ 0.85
VPS39-203ENST00000561797 RASSF7Q02833 373 aa20.35■□□□□ 0.85
VPS39-203ENST00000561797 NUTM1Q86Y26 1132 aa20.35■□□□□ 0.85
VPS39-203ENST00000561797 XAGE3Q8WTP9 111 aa20.35■□□□□ 0.85
VPS39-203ENST00000561797 MASTLQ96GX5 879 aa20.35■□□□□ 0.85
VPS39-203ENST00000561797 NYXQ9GZU5 481 aa20.35■□□□□ 0.85
VPS39-203ENST00000561797 UBN2Q6ZU65 1347 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 DICER1Q9UPY3 1922 aaKnown RBP20.34■□□□□ 0.85
VPS39-203ENST00000561797 ELL2O00472 640 aaPredicted RBP20.34■□□□□ 0.85
VPS39-203ENST00000561797 C21orf2O43822 256 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 HOXB7P09629 217 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 SUSD4Q5VX71 490 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 STYK1Q6J9G0 422 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 ZNF34Q8IZ26 560 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 CNKSR1Q969H4 720 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 RNF181Q9P0P0 153 aa20.34■□□□□ 0.85
VPS39-203ENST00000561797 ERFEQ4G0M1 354 aa20.33■□□□□ 0.85
VPS39-203ENST00000561797 TIAM2Q8IVF5 1701 aa20.33■□□□□ 0.84
VPS39-203ENST00000561797 LAMB2P55268 1798 aa20.31■□□□□ 0.84
VPS39-203ENST00000561797 NPR1P16066 1061 aa20.31■□□□□ 0.84
VPS39-203ENST00000561797 PRPF40BQ6NWY9 871 aaKnown RBP20.31■□□□□ 0.84
VPS39-203ENST00000561797 FAM9BQ8IZU0 186 aa20.31■□□□□ 0.84
VPS39-203ENST00000561797 DBF4Q9UBU7 674 aaPredicted RBP20.31■□□□□ 0.84
VPS39-203ENST00000561797 SALL2Q9Y467 1007 aaPredicted RBP20.31■□□□□ 0.84
VPS39-203ENST00000561797 ABCC12Q96J65 1359 aa20.31■□□□□ 0.84
VPS39-203ENST00000561797 KLRG2A4D1S0 409 aaPredicted RBP20.3■□□□□ 0.84
VPS39-203ENST00000561797 C1QTNF8P60827 252 aa20.3■□□□□ 0.84
VPS39-203ENST00000561797 PPP1R42Q7Z4L9 355 aa20.3■□□□□ 0.84
VPS39-203ENST00000561797 WWC1Q8IX03 1113 aa20.3■□□□□ 0.84
VPS39-203ENST00000561797 C8orf58Q8NAV2 365 aa20.3■□□□□ 0.84
VPS39-203ENST00000561797 NFKBIEO00221 500 aa20.29■□□□□ 0.84
VPS39-203ENST00000561797 NTSR2O95665 410 aa20.29■□□□□ 0.84
VPS39-203ENST00000561797 CCDC27Q2M243 656 aa20.29■□□□□ 0.84
VPS39-203ENST00000561797 PARP10Q53GL7 1025 aa20.29■□□□□ 0.84
VPS39-203ENST00000561797 TSR2Q969E8 191 aaKnown RBP20.29■□□□□ 0.84
VPS39-203ENST00000561797 LMNB1P20700 586 aa20.28■□□□□ 0.84
VPS39-203ENST00000561797 PRELPP51888 382 aa20.28■□□□□ 0.84
VPS39-203ENST00000561797 HSP90AB3PQ58FF7 597 aa20.28■□□□□ 0.84
VPS39-203ENST00000561797 HYPKQ9NX55 129 aa20.28■□□□□ 0.84
VPS39-203ENST00000561797 IBTKQ9P2D0 1353 aaPredicted RBP20.28■□□□□ 0.84
VPS39-203ENST00000561797 TCIRG1Q13488 830 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms