RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 PSMA6P60900 246 aaKnown RBP9.51□□□□□ -0.89
LRRC28-209ENST00000558861 SH3PXD2AQ5TCZ1 1133 aa9.51□□□□□ -0.89
LRRC28-209ENST00000558861 TRIM46Q7Z4K8 759 aa9.51□□□□□ -0.89
LRRC28-209ENST00000558861 NBPF15Q8N660 670 aa9.51□□□□□ -0.89
LRRC28-209ENST00000558861 NUP153P49790 1475 aaKnown RBP9.51□□□□□ -0.89
LRRC28-209ENST00000558861 RNF144AP50876 292 aaPredicted RBP9.5□□□□□ -0.89
LRRC28-209ENST00000558861 CTC1Q2NKJ3 1217 aa9.5□□□□□ -0.89
LRRC28-209ENST00000558861 SLC27A3Q5K4L6 730 aa9.5□□□□□ -0.89
LRRC28-209ENST00000558861 TMEM214Q6NUQ4 689 aaKnown RBP9.5□□□□□ -0.89
LRRC28-209ENST00000558861 PPARGC1BQ86YN6 1023 aaKnown RBP9.5□□□□□ -0.89
LRRC28-209ENST00000558861 ZDHHC1Q8WTX9 485 aa9.5□□□□□ -0.89
LRRC28-209ENST00000558861 C2orf49Q9BVC5 232 aaPredicted RBP9.5□□□□□ -0.89
LRRC28-209ENST00000558861 GRIP2Q9C0E4 1043 aa9.5□□□□□ -0.89
LRRC28-209ENST00000558861 PARP3Q9Y6F1 533 aa9.5□□□□□ -0.89
LRRC28-209ENST00000558861 FMN1Q68DA7 1419 aa9.49□□□□□ -0.89
LRRC28-209ENST00000558861 AXIN1O15169 862 aa9.49□□□□□ -0.89
LRRC28-209ENST00000558861 ST8SIA5O15466 376 aa9.49□□□□□ -0.89
LRRC28-209ENST00000558861 GPC1P35052 558 aa9.49□□□□□ -0.89
LRRC28-209ENST00000558861 SMCPP49901 116 aaPredicted RBP9.49□□□□□ -0.89
LRRC28-209ENST00000558861 ZNF211Q13398 564 aaPredicted RBP9.49□□□□□ -0.89
LRRC28-209ENST00000558861 NAA30Q147X3 362 aaPredicted RBP9.49□□□□□ -0.89
LRRC28-209ENST00000558861 CABP1Q9NZU7 370 aa9.49□□□□□ -0.89
LRRC28-209ENST00000558861 ATP10BO94823 1461 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 MAPKBP1O60336 1514 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 EML1O00423 815 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 ABL1P00519 1130 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 SCARF1Q14162 830 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 CRIPAKQ8N1N5 446 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 RNF217Q8TC41 542 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 RHBDD1Q8TEB9 315 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 VTI1AQ96AJ9 217 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 TTBK1Q5TCY1 1321 aaPredicted RBP9.48□□□□□ -0.89
LRRC28-209ENST00000558861 RAPGEF6Q8TEU7 1601 aa9.48□□□□□ -0.89
LRRC28-209ENST00000558861 PTCD1O75127 700 aaKnown RBP9.47□□□□□ -0.89
LRRC28-209ENST00000558861 GTF2E1P29083 439 aaPredicted RBP9.47□□□□□ -0.89
LRRC28-209ENST00000558861 TEAD4Q15561 434 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 POTEAQ6S8J7 498 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 STAG2Q8N3U4 1231 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 GTF3C2Q8WUA4 911 aaPredicted RBP9.47□□□□□ -0.89
LRRC28-209ENST00000558861 COL26A1Q96A83 441 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 NIFKQ9BYG3 293 aaKnown RBP9.47□□□□□ -0.89
LRRC28-209ENST00000558861 ANO2Q9NQ90 1003 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 ZNF232Q9UNY5 417 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 MTMR7Q9Y216 660 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 CASKIN1Q8WXD9 1431 aa9.47□□□□□ -0.89
LRRC28-209ENST00000558861 SERTM1A2A2V5 107 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 PLA2G4AP47712 749 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 MTMR3Q13615 1198 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 C4orf17Q53FE4 359 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 GNASQ5JWF2 1037 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 SND1Q7KZF4 910 aaKnown RBP eCLIP9.46□□□□□ -0.9
LRRC28-209ENST00000558861 L3MBTL2Q969R5 705 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 ZFP42Q96MM3 310 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 CHMP3Q9Y3E7 222 aa9.46□□□□□ -0.9
LRRC28-209ENST00000558861 DNMT3AQ9Y6K1 912 aaPredicted RBP9.46□□□□□ -0.9
LRRC28-209ENST00000558861 SOWAHDA6NJG2 315 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 TTLL8A6PVC2 850 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 NOS2P35228 1153 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 PHKA2P46019 1235 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 LAPTM4AQ15012 233 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 TMCO4Q5TGY1 634 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 PRICKLE2Q7Z3G6 844 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 NGLY1Q96IV0 654 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 SAP130Q9H0E3 1048 aa9.45□□□□□ -0.9
LRRC28-209ENST00000558861 PCF11O94913 1555 aaKnown RBP9.45□□□□□ -0.9
LRRC28-209ENST00000558861 ZCCHC11Q5TAX3 1644 aaKnown RBP9.45□□□□□ -0.9
LRRC28-209ENST00000558861 FIGNL2A6NMB9 653 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 HIRAP54198 1017 aaPredicted RBP9.44□□□□□ -0.9
LRRC28-209ENST00000558861 QTRT2Q9H974 415 aaKnown RBP9.44□□□□□ -0.9
LRRC28-209ENST00000558861 AAASQ9NRG9 546 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 DACH1Q9UI36 760 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 HCN4Q9Y3Q4 1203 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 SOS2Q07890 1332 aaPredicted RBP9.44□□□□□ -0.9
LRRC28-209ENST00000558861 ASXL2Q76L83 1435 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 FYCO1Q9BQS8 1478 aa9.44□□□□□ -0.9
LRRC28-209ENST00000558861 EPRSP07814 1512 aaKnown RBP9.44□□□□□ -0.9
LRRC28-209ENST00000558861 VPS8Q8N3P4 1428 aa9.43□□□□□ -0.9
LRRC28-209ENST00000558861 SPATA31C2B4DYI2 1134 aa9.43□□□□□ -0.9
LRRC28-209ENST00000558861 H3BRB1 525 aa9.43□□□□□ -0.9
LRRC28-209ENST00000558861 POU4F2Q12837 409 aa9.43□□□□□ -0.9
LRRC28-209ENST00000558861 TUT1Q9H6E5 874 aaKnown RBP9.43□□□□□ -0.9
LRRC28-209ENST00000558861 ATP13A2Q9NQ11 1180 aa9.43□□□□□ -0.9
LRRC28-209ENST00000558861 ABCC10Q5T3U5 1492 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 RHOQP17081 205 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 TXLNAP40222 546 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 COX20Q5RI15 118 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 C16orf46Q6P387 395 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 NBPF10Q6P3W6 841 aaKnown RBP9.42□□□□□ -0.9
LRRC28-209ENST00000558861 LYSMD3Q7Z3D4 306 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 ALDH16A1Q8IZ83 802 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 HELQQ8TDG4 1101 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 IRX2Q9BZI1 471 aaPredicted RBP9.42□□□□□ -0.9
LRRC28-209ENST00000558861 EGFL7Q9UHF1 273 aa9.42□□□□□ -0.9
LRRC28-209ENST00000558861 CDK13Q14004 1512 aaKnown RBP9.41□□□□□ -0.9
LRRC28-209ENST00000558861 WDR7Q9Y4E6 1490 aa9.41□□□□□ -0.9
LRRC28-209ENST00000558861 ICMTO60725 284 aa9.41□□□□□ -0.9
LRRC28-209ENST00000558861 PHACTR1Q9C0D0 580 aa9.41□□□□□ -0.9
LRRC28-209ENST00000558861 DNMT3LQ9UJW3 386 aa9.41□□□□□ -0.9
LRRC28-209ENST00000558861 LRFN2Q9ULH4 789 aa9.41□□□□□ -0.9
LRRC28-209ENST00000558861 HECW1Q76N89 1606 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms