RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CNKSR1Q969H4 720 aa19.3■□□□□ 0.68
SHMT2-235ENST00000557740 NIP7Q9Y221 180 aaKnown RBP eCLIP19.3■□□□□ 0.68
SHMT2-235ENST00000557740 COL11A2P13942 1736 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-235ENST00000557740 LAMB4A4D0S4 1761 aa19.29■□□□□ 0.68
SHMT2-235ENST00000557740 CEP350Q5VT06 3117 aa19.29■□□□□ 0.68
SHMT2-235ENST00000557740 NFKBIEO00221 500 aa19.29■□□□□ 0.68
SHMT2-235ENST00000557740 EIF4A1P60842 406 aaKnown RBP19.29■□□□□ 0.68
SHMT2-235ENST00000557740 DDX10Q13206 875 aaKnown RBP19.29■□□□□ 0.68
SHMT2-235ENST00000557740 STYK1Q6J9G0 422 aa19.29■□□□□ 0.68
SHMT2-235ENST00000557740 RBM46Q8TBY0 533 aaKnown RBP19.29■□□□□ 0.68
SHMT2-235ENST00000557740 DLG5Q8TDM6 1919 aa19.28■□□□□ 0.68
SHMT2-235ENST00000557740 SRGNP10124 158 aa19.28■□□□□ 0.68
SHMT2-235ENST00000557740 MASTLQ96GX5 879 aa19.28■□□□□ 0.68
SHMT2-235ENST00000557740 KDM3BQ7LBC6 1761 aa19.28■□□□□ 0.68
SHMT2-235ENST00000557740 MYBBP1AQ9BQG0 1328 aaKnown RBP19.27■□□□□ 0.68
SHMT2-235ENST00000557740 APLP1P51693 650 aa19.27■□□□□ 0.68
SHMT2-235ENST00000557740 PRELPP51888 382 aa19.27■□□□□ 0.68
SHMT2-235ENST00000557740 PRPF40BQ6NWY9 871 aaKnown RBP19.27■□□□□ 0.68
SHMT2-235ENST00000557740 TPTE2Q6XPS3 522 aa19.27■□□□□ 0.68
SHMT2-235ENST00000557740 NGEFQ8N5V2 710 aa19.27■□□□□ 0.68
SHMT2-235ENST00000557740 RRAGCQ9HB90 399 aa19.27■□□□□ 0.68
SHMT2-235ENST00000557740 SBF1O95248 1867 aa19.26■□□□□ 0.67
SHMT2-235ENST00000557740 FAM177BA6PVY3 158 aa19.26■□□□□ 0.67
SHMT2-235ENST00000557740 LMOD3Q0VAK6 560 aa19.26■□□□□ 0.67
SHMT2-235ENST00000557740 SOGA3Q5TF21 947 aa19.26■□□□□ 0.67
SHMT2-235ENST00000557740 KIF6Q6ZMV9 814 aa19.26■□□□□ 0.67
SHMT2-235ENST00000557740 TNRC6CQ9HCJ0 1690 aaKnown RBP19.26■□□□□ 0.67
SHMT2-235ENST00000557740 RIPK4P57078 832 aa19.25■□□□□ 0.67
SHMT2-235ENST00000557740 HLFQ16534 295 aa19.25■□□□□ 0.67
SHMT2-235ENST00000557740 TAOK3Q9H2K8 898 aa19.25■□□□□ 0.67
SHMT2-235ENST00000557740 TSPYL4Q9UJ04 414 aa19.25■□□□□ 0.67
SHMT2-235ENST00000557740 RRP7AQ9Y3A4 280 aaKnown RBP19.25■□□□□ 0.67
SHMT2-235ENST00000557740 GLTPD2A6NH11 291 aa19.24■□□□□ 0.67
SHMT2-235ENST00000557740 MYL6BP14649 208 aa19.24■□□□□ 0.67
SHMT2-235ENST00000557740 GTF2E1P29083 439 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-235ENST00000557740 LTBP3Q9NS15 1303 aa19.24■□□□□ 0.67
SHMT2-235ENST00000557740 TIAM2Q8IVF5 1701 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 ERVV-1B6SEH8 477 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 NPR1P16066 1061 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 FSTL1Q12841 308 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 ERFEQ4G0M1 354 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 MAP3K15Q6ZN16 1313 aa19.23■□□□□ 0.67
SHMT2-235ENST00000557740 TMPOP42166 694 aaKnown RBP19.22■□□□□ 0.67
SHMT2-235ENST00000557740 WDR43Q15061 677 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHMT2-235ENST00000557740 DPY19L2Q6NUT2 758 aa19.22■□□□□ 0.67
SHMT2-235ENST00000557740 NYXQ9GZU5 481 aa19.22■□□□□ 0.67
SHMT2-235ENST00000557740 ERBB4Q15303 1308 aa19.22■□□□□ 0.67
SHMT2-235ENST00000557740 VEGFAP15692 232 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-235ENST00000557740 TTLL7Q6ZT98 887 aa19.21■□□□□ 0.67
SHMT2-235ENST00000557740 SMC1BQ8NDV3 1235 aa19.21■□□□□ 0.67
SHMT2-235ENST00000557740 KLRG2A4D1S0 409 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-235ENST00000557740 CCDC93Q567U6 631 aa19.2■□□□□ 0.66
SHMT2-235ENST00000557740 CCDC146Q8IYE0 955 aa19.2■□□□□ 0.66
SHMT2-235ENST00000557740 ZBTB3Q9H5J0 574 aa19.2■□□□□ 0.66
SHMT2-235ENST00000557740 BABAM1Q9NWV8 329 aa19.2■□□□□ 0.66
SHMT2-235ENST00000557740 SLX4Q8IY92 1834 aa19.19■□□□□ 0.66
SHMT2-235ENST00000557740 EIF2S2P20042 333 aaKnown RBP19.18■□□□□ 0.66
SHMT2-235ENST00000557740 NEUROD2Q15784 382 aa19.18■□□□□ 0.66
SHMT2-235ENST00000557740 ARFGEF2Q9Y6D5 1785 aa19.18■□□□□ 0.66
SHMT2-235ENST00000557740 FER1L6Q2WGJ9 1857 aa19.18■□□□□ 0.66
SHMT2-235ENST00000557740 ABCC12Q96J65 1359 aa19.18■□□□□ 0.66
SHMT2-235ENST00000557740 IBTKQ9P2D0 1353 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-235ENST00000557740 GPTP24298 496 aa19.17■□□□□ 0.66
SHMT2-235ENST00000557740 NUTM1Q86Y26 1132 aa19.17■□□□□ 0.66
SHMT2-235ENST00000557740 C7orf43Q8WVR3 580 aa19.17■□□□□ 0.66
SHMT2-235ENST00000557740 RUNDC1Q96C34 613 aa19.17■□□□□ 0.66
SHMT2-235ENST00000557740 ALDH1B1P30837 517 aa19.16■□□□□ 0.66
SHMT2-235ENST00000557740 UBN2Q6ZU65 1347 aa19.16■□□□□ 0.66
SHMT2-235ENST00000557740 CACNA1SQ13698 1873 aa19.16■□□□□ 0.66
SHMT2-235ENST00000557740 FKBP4Q02790 459 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHMT2-235ENST00000557740 GIGYF2Q6Y7W6 1299 aaKnown RBP19.15■□□□□ 0.66
SHMT2-235ENST00000557740 RTKN2Q8IZC4 609 aa19.15■□□□□ 0.66
SHMT2-235ENST00000557740 CRY2Q49AN0 593 aa19.14■□□□□ 0.65
SHMT2-235ENST00000557740 RPGRQ92834 1020 aaKnown RBP19.14■□□□□ 0.65
SHMT2-235ENST00000557740 RIC1Q4ADV7 1423 aa19.14■□□□□ 0.65
SHMT2-235ENST00000557740 CCDC88AQ3V6T2 1871 aa19.14■□□□□ 0.65
SHMT2-235ENST00000557740 PDIA6Q15084 440 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 PROSER3Q2NL68 480 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 PARP10Q53GL7 1025 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 SUSD4Q5VX71 490 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 OLFM4Q6UX06 510 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 PPP1R42Q7Z4L9 355 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 ZNF34Q8IZ26 560 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 ZNF277Q9NRM2 450 aaPredicted RBP19.13■□□□□ 0.65
SHMT2-235ENST00000557740 LAS1LQ9Y4W2 734 aaKnown RBP19.13■□□□□ 0.65
SHMT2-235ENST00000557740 WDR90Q96KV7 1748 aa19.13■□□□□ 0.65
SHMT2-235ENST00000557740 NTSR2O95665 410 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 ANXA1P04083 346 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 HTRA3P83110 453 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 LRP10Q7Z4F1 713 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 NECTIN2Q92692 538 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 PRKRIP1Q9H875 184 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-235ENST00000557740 ADAMTS8Q9UP79 889 aa19.12■□□□□ 0.65
SHMT2-235ENST00000557740 DICER1Q9UPY3 1922 aaKnown RBP19.12■□□□□ 0.65
SHMT2-235ENST00000557740 NUP98P52948 1817 aa19.11■□□□□ 0.65
SHMT2-235ENST00000557740 POTECB2RU33 542 aa19.11■□□□□ 0.65
SHMT2-235ENST00000557740 CHL1O00533 1208 aa19.11■□□□□ 0.65
SHMT2-235ENST00000557740 DDNO94850 711 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-235ENST00000557740 DNAJC5GQ8N7S2 189 aa19.11■□□□□ 0.65
SHMT2-235ENST00000557740 TRIM35Q9UPQ4 493 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms