RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 CABP4P57796 275 aa18.58■□□□□ 0.56
TMEM260-215ENST00000557626 BCL2L12Q9HB09 334 aa18.58■□□□□ 0.56
TMEM260-215ENST00000557626 CCDC93Q567U6 631 aa18.57■□□□□ 0.56
TMEM260-215ENST00000557626 GGNBP2Q9H3C7 697 aa18.57■□□□□ 0.56
TMEM260-215ENST00000557626 SAGE1Q9NXZ1 904 aa18.57■□□□□ 0.56
TMEM260-215ENST00000557626 HSP90AB1P08238 724 aaKnown RBP18.56■□□□□ 0.56
TMEM260-215ENST00000557626 FKBP4Q02790 459 aaKnown RBP eCLIP18.56■□□□□ 0.56
TMEM260-215ENST00000557626 ZIC5Q96T25 663 aa18.56■□□□□ 0.56
TMEM260-215ENST00000557626 FZD9O00144 591 aa18.55■□□□□ 0.56
TMEM260-215ENST00000557626 STYK1Q6J9G0 422 aa18.55■□□□□ 0.56
TMEM260-215ENST00000557626 CCDC24Q8N4L8 307 aa18.55■□□□□ 0.56
TMEM260-215ENST00000557626 ANKRD26Q9UPS8 1709 aa18.54■□□□□ 0.56
TMEM260-215ENST00000557626 AKAP4Q5JQC9 854 aa18.54■□□□□ 0.56
TMEM260-215ENST00000557626 AKAP11Q9UKA4 1901 aa18.53■□□□□ 0.56
TMEM260-215ENST00000557626 GJA3Q9Y6H8 435 aa18.53■□□□□ 0.56
TMEM260-215ENST00000557626 BCORQ6W2J9 1755 aa18.53■□□□□ 0.56
TMEM260-215ENST00000557626 FYB1O15117 783 aa18.52■□□□□ 0.56
TMEM260-215ENST00000557626 PRR5LQ6MZQ0 368 aa18.52■□□□□ 0.56
TMEM260-215ENST00000557626 USP50Q70EL3 339 aaPredicted RBP18.52■□□□□ 0.56
TMEM260-215ENST00000557626 EYA1Q99502 592 aa18.52■□□□□ 0.56
TMEM260-215ENST00000557626 COL6A3P12111 3177 aa18.52■□□□□ 0.55
TMEM260-215ENST00000557626 SCN11AQ9UI33 1791 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 TRPA1O75762 1119 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 SRGNP10124 158 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 EPS15P42566 896 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 DNAJC10Q8IXB1 793 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 MASTLQ96GX5 879 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 ZNF408Q9H9D4 720 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 EMILIN1Q9Y6C2 1016 aa18.51■□□□□ 0.55
TMEM260-215ENST00000557626 IARSP41252 1262 aaKnown RBP18.5■□□□□ 0.55
TMEM260-215ENST00000557626 PUS7Q96PZ0 661 aaKnown RBP18.5■□□□□ 0.55
TMEM260-215ENST00000557626 TRIOBPQ9H2D6 2365 aa18.5■□□□□ 0.55
TMEM260-215ENST00000557626 NPHP1O15259 732 aa18.49■□□□□ 0.55
TMEM260-215ENST00000557626 SCNN1DP51172 638 aa18.49■□□□□ 0.55
TMEM260-215ENST00000557626 PKN2Q16513 984 aaKnown RBP18.49■□□□□ 0.55
TMEM260-215ENST00000557626 C7orf43Q8WVR3 580 aa18.49■□□□□ 0.55
TMEM260-215ENST00000557626 JDP2Q8WYK2 163 aa18.49■□□□□ 0.55
TMEM260-215ENST00000557626 RNF186Q9NXI6 227 aa18.49■□□□□ 0.55
TMEM260-215ENST00000557626 PPM1GO15355 546 aaPredicted RBP18.48■□□□□ 0.55
TMEM260-215ENST00000557626 EIF6P56537 245 aaKnown RBP18.48■□□□□ 0.55
TMEM260-215ENST00000557626 TBC1D9BQ66K14 1250 aa18.48■□□□□ 0.55
TMEM260-215ENST00000557626 PCGF6Q9BYE7 350 aa18.48■□□□□ 0.55
TMEM260-215ENST00000557626 ZBTB1Q9Y2K1 713 aa18.48■□□□□ 0.55
TMEM260-215ENST00000557626 KIF20BQ96Q89 1820 aa18.48■□□□□ 0.55
TMEM260-215ENST00000557626 RTKN2Q8IZC4 609 aa18.47■□□□□ 0.55
TMEM260-215ENST00000557626 NFATC2IPQ8NCF5 419 aa18.47■□□□□ 0.55
TMEM260-215ENST00000557626 L3MBTL2Q969R5 705 aa18.47■□□□□ 0.55
TMEM260-215ENST00000557626 CYP19A1P11511 503 aaPredicted RBP18.46■□□□□ 0.55
TMEM260-215ENST00000557626 HUNKP57058 714 aa18.46■□□□□ 0.55
TMEM260-215ENST00000557626 CNBD1Q8NA66 436 aa18.46■□□□□ 0.55
TMEM260-215ENST00000557626 GLIS2Q9BZE0 524 aaPredicted RBP18.46■□□□□ 0.55
TMEM260-215ENST00000557626 ST5P78524 1137 aa18.45■□□□□ 0.54
TMEM260-215ENST00000557626 SYNE4Q8N205 404 aa18.45■□□□□ 0.54
TMEM260-215ENST00000557626 ZNF530Q6P9A1 599 aaPredicted RBP18.44■□□□□ 0.54
TMEM260-215ENST00000557626 OLFM4Q6UX06 510 aa18.44■□□□□ 0.54
TMEM260-215ENST00000557626 COLQQ9Y215 455 aaPredicted RBP18.44■□□□□ 0.54
TMEM260-215ENST00000557626 SCN7AQ01118 1682 aa18.44■□□□□ 0.54
TMEM260-215ENST00000557626 ST20-MTHFSA0A0A6YYL1 179 aa18.43■□□□□ 0.54
TMEM260-215ENST00000557626 MTHFSP49914 203 aa18.43■□□□□ 0.54
TMEM260-215ENST00000557626 KIF23Q02241 960 aaPredicted RBP18.43■□□□□ 0.54
TMEM260-215ENST00000557626 ADARB2Q9NS39 739 aaKnown RBP18.42■□□□□ 0.54
TMEM260-215ENST00000557626 HDAC9Q9UKV0 1011 aa18.42■□□□□ 0.54
TMEM260-215ENST00000557626 CEP290O15078 2479 aa18.42■□□□□ 0.54
TMEM260-215ENST00000557626 FAM155AB1AL88 458 aaPredicted RBP18.41■□□□□ 0.54
TMEM260-215ENST00000557626 PLEKHO1Q53GL0 409 aaPredicted RBP18.41■□□□□ 0.54
TMEM260-215ENST00000557626 WASHC2AQ641Q2 1341 aa18.41■□□□□ 0.54
TMEM260-215ENST00000557626 CANXP27824 592 aaKnown RBP18.4■□□□□ 0.54
TMEM260-215ENST00000557626 RGMBQ6NW40 437 aa18.4■□□□□ 0.54
TMEM260-215ENST00000557626 PITPNM2Q9BZ72 1349 aa18.4■□□□□ 0.54
TMEM260-215ENST00000557626 COL4A5P29400 1685 aa18.39■□□□□ 0.53
TMEM260-215ENST00000557626 A0A087WZG4 1122 aa18.39■□□□□ 0.53
TMEM260-215ENST00000557626 NPR1P16066 1061 aa18.39■□□□□ 0.53
TMEM260-215ENST00000557626 CENPFP49454 3210 aa18.39■□□□□ 0.53
TMEM260-215ENST00000557626 HTTP42858 3142 aa18.38■□□□□ 0.53
TMEM260-215ENST00000557626 C1orf141Q5JVX7 400 aa18.38■□□□□ 0.53
TMEM260-215ENST00000557626 CCDC102AQ96A19 550 aa18.38■□□□□ 0.53
TMEM260-215ENST00000557626 SETDB2Q96T68 719 aa18.38■□□□□ 0.53
TMEM260-215ENST00000557626 FBXO46Q6PJ61 603 aaPredicted RBP18.37■□□□□ 0.53
TMEM260-215ENST00000557626 PSMD1Q99460 953 aa18.37■□□□□ 0.53
TMEM260-215ENST00000557626 CARD11Q9BXL7 1154 aa18.37■□□□□ 0.53
TMEM260-215ENST00000557626 BRCA2P51587 3418 aa18.36■□□□□ 0.53
TMEM260-215ENST00000557626 CDC37L1Q7L3B6 337 aa18.36■□□□□ 0.53
TMEM260-215ENST00000557626 GPRC5DQ9NZD1 345 aa18.36■□□□□ 0.53
TMEM260-215ENST00000557626 MNX1P50219 401 aaPredicted RBP18.35■□□□□ 0.53
TMEM260-215ENST00000557626 ZNF157P51786 506 aaPredicted RBP18.35■□□□□ 0.53
TMEM260-215ENST00000557626 EIF5P55010 431 aaKnown RBP18.35■□□□□ 0.53
TMEM260-215ENST00000557626 AMOTQ4VCS5 1084 aa18.35■□□□□ 0.53
TMEM260-215ENST00000557626 RANBP2P49792 3224 aaKnown RBP18.35■□□□□ 0.53
TMEM260-215ENST00000557626 CSRNP1Q96S65 589 aa18.34■□□□□ 0.53
TMEM260-215ENST00000557626 PGAP2Q9UHJ9 254 aa18.34■□□□□ 0.53
TMEM260-215ENST00000557626 LARGE2Q8N3Y3 721 aa18.33■□□□□ 0.52
TMEM260-215ENST00000557626 ZNF296Q8WUU4 475 aaPredicted RBP18.33■□□□□ 0.52
TMEM260-215ENST00000557626 KIAA0100Q14667 2235 aaKnown RBP18.33■□□□□ 0.52
TMEM260-215ENST00000557626 POTEFA5A3E0 1075 aa18.32■□□□□ 0.52
TMEM260-215ENST00000557626 EIF4A2Q14240 407 aaKnown RBP18.32■□□□□ 0.52
TMEM260-215ENST00000557626 ZC3H15Q8WU90 426 aaKnown RBP18.32■□□□□ 0.52
TMEM260-215ENST00000557626 TBC1D2BQ9UPU7 963 aa18.32■□□□□ 0.52
TMEM260-215ENST00000557626 ZNF330Q9Y3S2 320 aaPredicted RBP18.32■□□□□ 0.52
TMEM260-215ENST00000557626 SLC39A6Q13433 755 aa18.31■□□□□ 0.52
TMEM260-215ENST00000557626 GBA2Q9HCG7 927 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms