RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 H0YIN7 160 aa14.46□□□□□ -0.09
SYNE2-227ENST00000557307 TTLL7Q6ZT98 887 aa14.46□□□□□ -0.09
SYNE2-227ENST00000557307 SLC51AQ86UW1 340 aa14.46□□□□□ -0.09
SYNE2-227ENST00000557307 CNBD1Q8NA66 436 aa14.46□□□□□ -0.09
SYNE2-227ENST00000557307 ZNF622Q969S3 477 aaKnown RBP eCLIP14.46□□□□□ -0.09
SYNE2-227ENST00000557307 SETDB2Q96T68 719 aa14.46□□□□□ -0.09
SYNE2-227ENST00000557307 ABCC12Q96J65 1359 aa14.46□□□□□ -0.1
SYNE2-227ENST00000557307 MYBBP1AQ9BQG0 1328 aaKnown RBP14.45□□□□□ -0.1
SYNE2-227ENST00000557307 MAPK8IP3Q9UPT6 1336 aa14.45□□□□□ -0.1
SYNE2-227ENST00000557307 RALBP1Q15311 655 aa14.45□□□□□ -0.1
SYNE2-227ENST00000557307 NGEFQ8N5V2 710 aa14.45□□□□□ -0.1
SYNE2-227ENST00000557307 BRIP1Q9BX63 1249 aa14.45□□□□□ -0.1
SYNE2-227ENST00000557307 C21orf2O43822 256 aa14.44□□□□□ -0.1
SYNE2-227ENST00000557307 ANXA1P04083 346 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 SRGNP10124 158 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 MYL6BP14649 208 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 HSPA6P17066 643 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 TMPOP42166 694 aaKnown RBP14.43□□□□□ -0.1
SYNE2-227ENST00000557307 RIPK4P57078 832 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 OLFM4Q6UX06 510 aa14.43□□□□□ -0.1
SYNE2-227ENST00000557307 NIP7Q9Y221 180 aaKnown RBP eCLIP14.43□□□□□ -0.1
SYNE2-227ENST00000557307 UBN2Q6ZU65 1347 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 TAF1P21675 1872 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 NEFMP07197 916 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 PDE6BP35913 854 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 KRT24Q2M2I5 525 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 PROSER3Q2NL68 480 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 PRPF40BQ6NWY9 871 aaKnown RBP14.42□□□□□ -0.1
SYNE2-227ENST00000557307 LRP10Q7Z4F1 713 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 NBPF5PQ86XG9 351 aaPredicted RBP14.42□□□□□ -0.1
SYNE2-227ENST00000557307 RRAGCQ9HB90 399 aa14.42□□□□□ -0.1
SYNE2-227ENST00000557307 LMNB1P20700 586 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 ST5P78524 1137 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 CLEC4GQ6UXB4 293 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 NPM2Q86SE8 214 aaKnown RBP14.41□□□□□ -0.1
SYNE2-227ENST00000557307 PNISRQ8TF01 805 aaKnown RBP14.41□□□□□ -0.1
SYNE2-227ENST00000557307 ZBTB3Q9H5J0 574 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 TSPYL4Q9UJ04 414 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 COL4A5P29400 1685 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 DDX60Q8IY21 1712 aaKnown RBP14.41□□□□□ -0.1
SYNE2-227ENST00000557307 SNED1Q8TER0 1413 aa14.41□□□□□ -0.1
SYNE2-227ENST00000557307 NPHP1O15259 732 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 HTRA3P83110 453 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 PDIA6Q15084 440 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 NEUROD2Q15784 382 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 NUTM1Q86Y26 1132 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 TRIM35Q9UPQ4 493 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 MAP3K15Q6ZN16 1313 aa14.4□□□□□ -0.1
SYNE2-227ENST00000557307 POTECB2RU33 542 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 TOMM70O94826 608 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 GPTP24298 496 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 STYK1Q6J9G0 422 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 NECTIN2Q92692 538 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 ADAMTS8Q9UP79 889 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 ZNF652Q9Y2D9 606 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 COL4A1P02462 1669 aa14.39□□□□□ -0.11
SYNE2-227ENST00000557307 KLRG2A4D1S0 409 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-227ENST00000557307 C3orf67Q6ZVT6 689 aa14.38□□□□□ -0.11
SYNE2-227ENST00000557307 C7orf43Q8WVR3 580 aa14.38□□□□□ -0.11
SYNE2-227ENST00000557307 MASTLQ96GX5 879 aa14.38□□□□□ -0.11
SYNE2-227ENST00000557307 PRKRIP1Q9H875 184 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-227ENST00000557307 KDM2BQ8NHM5 1336 aa14.38□□□□□ -0.11
SYNE2-227ENST00000557307 EIF2S2P20042 333 aaKnown RBP14.37□□□□□ -0.11
SYNE2-227ENST00000557307 ERFEQ4G0M1 354 aa14.37□□□□□ -0.11
SYNE2-227ENST00000557307 SUSD4Q5VX71 490 aa14.37□□□□□ -0.11
SYNE2-227ENST00000557307 GLTPD2A6NH11 291 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 NTSR2O95665 410 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 CCDC184Q52MB2 194 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 ZNF428Q96B54 188 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 PNNQ9H307 717 aaKnown RBP14.36□□□□□ -0.11
SYNE2-227ENST00000557307 PDZRN3Q9UPQ7 1066 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 LTBP3Q9NS15 1303 aa14.36□□□□□ -0.11
SYNE2-227ENST00000557307 ZC3H4Q9UPT8 1303 aaKnown RBP14.36□□□□□ -0.11
SYNE2-227ENST00000557307 LTBP1Q14766 1721 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 ERVV-1B6SEH8 477 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 RGL2O15211 777 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 NPR1P16066 1061 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 KIF6Q6ZMV9 814 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 ZNF34Q8IZ26 560 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 RBM46Q8TBY0 533 aaKnown RBP14.35□□□□□ -0.11
SYNE2-227ENST00000557307 CNKSR1Q969H4 720 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 RUNDC1Q96C34 613 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 TAOK3Q9H2K8 898 aa14.35□□□□□ -0.11
SYNE2-227ENST00000557307 ADAMTSL1Q8N6G6 1762 aa14.34□□□□□ -0.11
SYNE2-227ENST00000557307 RIC1Q4ADV7 1423 aa14.34□□□□□ -0.11
SYNE2-227ENST00000557307 TPTE2Q6XPS3 522 aa14.34□□□□□ -0.11
SYNE2-227ENST00000557307 LAS1LQ9Y4W2 734 aaKnown RBP14.34□□□□□ -0.11
SYNE2-227ENST00000557307 ERBB4Q15303 1308 aa14.34□□□□□ -0.11
SYNE2-227ENST00000557307 SCN4AP35499 1836 aa14.34□□□□□ -0.11
SYNE2-227ENST00000557307 IBTKQ9P2D0 1353 aaPredicted RBP14.34□□□□□ -0.11
SYNE2-227ENST00000557307 CHL1O00533 1208 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 POTEIP0CG38 1075 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 POTEJP0CG39 1038 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 WDR43Q15061 677 aaKnown RBP eCLIP14.33□□□□□ -0.12
SYNE2-227ENST00000557307 GIGYF2Q6Y7W6 1299 aaKnown RBP14.33□□□□□ -0.12
SYNE2-227ENST00000557307 DNAJC5GQ8N7S2 189 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 ZNF541Q9H0D2 1346 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 PCNTO95613 3336 aa14.33□□□□□ -0.12
SYNE2-227ENST00000557307 LRRC37AA6NMS7 1700 aa14.32□□□□□ -0.12
SYNE2-227ENST00000557307 DDNO94850 711 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms