RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	CNTNAP3B	Q96NU0	1288 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	CNTNAP3	Q9BZ76	1288 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	NKTR	P30414	1462 aa	Known RBP	7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	TET3	O43151	1660 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	EP400	Q96L91	3159 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	CEP162	Q5TB80	1403 aa		7.52	□□□□□ -1.2
SCFD1-223	ENST00000557076	ITGA6	P23229	1130 aa		7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	CTSO	P43234	321 aa	Predicted RBP	7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	DZIP3	Q86Y13	1208 aa	Known RBP	7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	INSM2	Q96T92	566 aa	Predicted RBP	7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	POLM	Q9NP87	494 aa	Predicted RBP	7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	TRPC5	Q9UL62	973 aa	Predicted RBP	7.52	□□□□□ -1.21
SCFD1-223	ENST00000557076	RNF225	M0QZC1	329 aa	Predicted RBP	7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	ADH1A	P07327	375 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	SEPT12	Q8IYM1	358 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	FNBP4	Q8N3X1	1017 aa	Predicted RBP	7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	ZNF784	Q8NCA9	323 aa	Predicted RBP	7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	RNF217	Q8TC41	542 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	EPS8L1	Q8TE68	723 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	COL25A1	Q9BXS0	654 aa	Predicted RBP	7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	HMX1	Q9NP08	348 aa	Predicted RBP	7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	PHLPP1	O60346	1717 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	RGS12	O14924	1447 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	SETD5	Q9C0A6	1442 aa		7.51	□□□□□ -1.21
SCFD1-223	ENST00000557076	CAMSAP2	Q08AD1	1489 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	UBR1	Q8IWV7	1749 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	COL16A1	Q07092	1604 aa	Predicted RBP	7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	RFC5	P40937	340 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	SV2A	Q7L0J3	742 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	GOPC	Q9HD26	462 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	TMPRSS4	Q9NRS4	437 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	USP21	Q9UK80	565 aa		7.5	□□□□□ -1.21
SCFD1-223	ENST00000557076	ESPN	B1AK53	854 aa		7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	ERVH48-1	M5A8F1	160 aa		7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	PPP1R15A	O75807	674 aa	Predicted RBP	7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	RAB15	P59190	212 aa		7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	ZNF395	Q9H8N7	513 aa	Predicted RBP	7.49	□□□□□ -1.21
SCFD1-223	ENST00000557076	PLEKHG1	Q9ULL1	1385 aa		7.48	□□□□□ -1.21
SCFD1-223	ENST00000557076	CDC14C	A4D256	554 aa		7.48	□□□□□ -1.21
SCFD1-223	ENST00000557076	LILRA1	O75019	489 aa		7.48	□□□□□ -1.21
SCFD1-223	ENST00000557076	ADAMTS2	O95450	1211 aa		7.48	□□□□□ -1.21
SCFD1-223	ENST00000557076	PTGIR	P43119	386 aa		7.48	□□□□□ -1.21
SCFD1-223	ENST00000557076	TIAM1	Q13009	1591 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	TMEM259	Q4ZIN3	620 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	VWA5B2	Q8N398	1253 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	RRP7BP	Q9NSQ0	103 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	ADAMTS8	Q9UP79	889 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	AMOTL2	Q9Y2J4	779 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	AHDC1	Q5TGY3	1603 aa	Predicted RBP	7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	EFCAB6	Q5THR3	1501 aa		7.47	□□□□□ -1.21
SCFD1-223	ENST00000557076	KANK1	Q14678	1352 aa		7.46	□□□□□ -1.21
SCFD1-223	ENST00000557076	PIK3R4	Q99570	1358 aa		7.46	□□□□□ -1.21
SCFD1-223	ENST00000557076	CFAP65	Q6ZU64	1925 aa	Known RBP	7.46	□□□□□ -1.21
SCFD1-223	ENST00000557076	SETBP1	Q9Y6X0	1596 aa		7.46	□□□□□ -1.21
SCFD1-223	ENST00000557076	SLURP2	P0DP57	97 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	RNFT1	Q5M7Z0	435 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	FOXD4L5	Q5VV16	416 aa	Predicted RBP	7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	LYSMD3	Q7Z3D4	306 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	SVOP	Q8N4V2	548 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	PCMTD1	Q96MG8	357 aa	Predicted RBP	7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	NWD1	Q149M9	1564 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	PNPLA6	Q8IY17	1366 aa		7.46	□□□□□ -1.22
SCFD1-223	ENST00000557076	SENP3-EIF4A1	A0A087X0R7	540 aa		7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	ADD1	P35611	737 aa	Known RBP	7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	ZNF385C	Q66K41	422 aa	Predicted RBP	7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	GJD4	Q96KN9	370 aa	Predicted RBP	7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	TRIM34	Q9BYJ4	488 aa		7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	ARHGEF5	Q12774	1597 aa		7.45	□□□□□ -1.22
SCFD1-223	ENST00000557076	NOS1	P29475	1434 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	ZBBX	A8MT70	800 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	GSK3A	P49840	483 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	TMEM151A	Q8N4L1	468 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	KDF1	Q8NAX2	398 aa	Predicted RBP	7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	DDX17	Q92841	729 aa	Known RBP	7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	SHPRH	Q149N8	1683 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	ZFYVE9	O95405	1425 aa		7.44	□□□□□ -1.22
SCFD1-223	ENST00000557076	MROH1	Q8NDA8	1641 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	GDF11	O95390	407 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	RNF144A	P50876	292 aa	Predicted RBP	7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	RASSF7	Q02833	373 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	SF3B2	Q13435	895 aa	Known RBP	7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	DEFB132	Q7Z7B7	95 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	ZNF592	Q92610	1267 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	GMCL1	Q96IK5	515 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	CYLD	Q9NQC7	956 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	KIF15	Q9NS87	1388 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	DCC	P43146	1447 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	RIMS2	Q9UQ26	1411 aa		7.43	□□□□□ -1.22
SCFD1-223	ENST00000557076	DUOX2	Q9NRD8	1548 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	DIP2A	Q14689	1571 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	KDM5A	P29375	1690 aa	Known RBP	7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	ATP5J2-PTCD1	G3V325	749 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	GPC1	P35052	558 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	RNF20	Q5VTR2	975 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	PCDHB9	Q9Y5E1	797 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	ATRN	O75882	1429 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	BLM	P54132	1417 aa	Predicted RBP	7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	MYOM3	Q5VTT5	1437 aa		7.42	□□□□□ -1.22
SCFD1-223	ENST00000557076	EHBP1L1	Q8N3D4	1523 aa		7.42	□□□□□ -1.22

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