RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 NUP98P52948 1817 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 MAP3K15Q6ZN16 1313 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 ELL2O00472 640 aaPredicted RBP13.83□□□□□ -0.2
LINC00239-201ENST00000556973 LRP10Q7Z4F1 713 aa13.83□□□□□ -0.2
LINC00239-201ENST00000556973 C8orf58Q8NAV2 365 aa13.83□□□□□ -0.2
LINC00239-201ENST00000556973 C10orf71Q711Q0 1435 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 N4BP2Q86UW6 1770 aaPredicted RBP13.82□□□□□ -0.2
LINC00239-201ENST00000556973 HLFQ16534 295 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 GPR162Q16538 588 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 TTLL7Q6ZT98 887 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 TSR2Q969E8 191 aaKnown RBP13.82□□□□□ -0.2
LINC00239-201ENST00000556973 CHPF2Q9P2E5 772 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 CARMIL3Q8ND23 1372 aa13.82□□□□□ -0.2
LINC00239-201ENST00000556973 ANXA1P04083 346 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 GOLGA2Q08379 1002 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 PROSER3Q2NL68 480 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 CCDC30Q5VVM6 783 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 COPS6Q7L5N1 327 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 HYPKQ9NX55 129 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 NIP7Q9Y221 180 aaKnown RBP eCLIP13.81□□□□□ -0.2
LINC00239-201ENST00000556973 KIAA1551Q9HCM1 1747 aa13.81□□□□□ -0.2
LINC00239-201ENST00000556973 A0A0G2JLW4 131 aa13.8□□□□□ -0.2
LINC00239-201ENST00000556973 TWISTNBQ3B726 338 aaPredicted RBP13.8□□□□□ -0.2
LINC00239-201ENST00000556973 TPTE2Q6XPS3 522 aa13.8□□□□□ -0.2
LINC00239-201ENST00000556973 GIGYF2Q6Y7W6 1299 aaKnown RBP13.8□□□□□ -0.2
LINC00239-201ENST00000556973 PELP1Q8IZL8 1130 aaKnown RBP13.8□□□□□ -0.2
LINC00239-201ENST00000556973 TSPYL6Q8N831 410 aa13.8□□□□□ -0.2
LINC00239-201ENST00000556973 ZBTB3Q9H5J0 574 aa13.8□□□□□ -0.2
LINC00239-201ENST00000556973 GRIN3BO60391 1043 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 AIMP1Q12904 312 aaKnown RBP13.79□□□□□ -0.2
LINC00239-201ENST00000556973 XAGE3Q8WTP9 111 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 BRIP1Q9BX63 1249 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 MYH16Q9H6N6 1097 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 ZNF521Q96K83 1311 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 FANCIQ9NVI1 1328 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 PXDNLA1KZ92 1463 aa13.79□□□□□ -0.2
LINC00239-201ENST00000556973 NPHP1O15259 732 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 DPEP1P16444 411 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 PRR5LQ6MZQ0 368 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 ANKRD13DQ6ZTN6 518 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 NBPF5PQ86XG9 351 aaPredicted RBP13.78□□□□□ -0.2
LINC00239-201ENST00000556973 CNBD1Q8NA66 436 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
LINC00239-201ENST00000556973 PDZRN3Q9UPQ7 1066 aa13.78□□□□□ -0.2
LINC00239-201ENST00000556973 BRCA1P38398 1863 aaKnown RBP13.78□□□□□ -0.2
LINC00239-201ENST00000556973 KCNA3P22001 575 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 PDE6BP35913 854 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 ST5P78524 1137 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 HSP90AB3PQ58FF7 597 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 ZNF34Q8IZ26 560 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 PLBD2Q8NHP8 589 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 NYXQ9GZU5 481 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 PIM2Q9P1W9 311 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 ATP10DQ9P241 1426 aa13.77□□□□□ -0.21
LINC00239-201ENST00000556973 ANKRD31Q8N7Z5 1873 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 H0YIN7 160 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 VAMP4O75379 141 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 YBX3P16989 372 aaKnown RBP eCLIP13.76□□□□□ -0.21
LINC00239-201ENST00000556973 GTF2E1P29083 439 aaPredicted RBP13.76□□□□□ -0.21
LINC00239-201ENST00000556973 EXOSC9Q06265 439 aaKnown RBP13.76□□□□□ -0.21
LINC00239-201ENST00000556973 PPP1R42Q7Z4L9 355 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 STK31Q9BXU1 1019 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 CACNA1FO60840 1977 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 ANKRD36CQ5JPF3 1778 aa13.76□□□□□ -0.21
LINC00239-201ENST00000556973 GPTP24298 496 aa13.75□□□□□ -0.21
LINC00239-201ENST00000556973 CHRNA5P30532 468 aa13.75□□□□□ -0.21
LINC00239-201ENST00000556973 TCIRG1Q13488 830 aa13.75□□□□□ -0.21
LINC00239-201ENST00000556973 PARP10Q53GL7 1025 aa13.75□□□□□ -0.21
LINC00239-201ENST00000556973 PHAXQ9H814 394 aaKnown RBP13.75□□□□□ -0.21
LINC00239-201ENST00000556973 DLEC1Q9Y238 1755 aa13.75□□□□□ -0.21
LINC00239-201ENST00000556973 CHD4Q14839 1912 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 FAM177BA6PVY3 158 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 E9PSI1 815 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 DDX58O95786 925 aaKnown RBP13.74□□□□□ -0.21
LINC00239-201ENST00000556973 SLC4A2P04920 1241 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 SUSD4Q5VX71 490 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 C2CD5Q86YS7 1000 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 CCDC24Q8N4L8 307 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 BCS1LQ9Y276 419 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 ARFGEF1Q9Y6D6 1849 aa13.74□□□□□ -0.21
LINC00239-201ENST00000556973 UBN2Q6ZU65 1347 aa13.73□□□□□ -0.21
LINC00239-201ENST00000556973 SLFN5Q08AF3 891 aa13.73□□□□□ -0.21
LINC00239-201ENST00000556973 DALRD3Q5D0E6 543 aaKnown RBP13.73□□□□□ -0.21
LINC00239-201ENST00000556973 RIC3Q7Z5B4 369 aa13.73□□□□□ -0.21
LINC00239-201ENST00000556973 WWC3Q9ULE0 1092 aa13.73□□□□□ -0.21
LINC00239-201ENST00000556973 ARFGEF2Q9Y6D5 1785 aa13.73□□□□□ -0.21
LINC00239-201ENST00000556973 IBTKQ9P2D0 1353 aaPredicted RBP13.72□□□□□ -0.21
LINC00239-201ENST00000556973 UTP14AQ9BVJ6 771 aaKnown RBP13.72□□□□□ -0.21
LINC00239-201ENST00000556973 KLRG2A4D1S0 409 aaPredicted RBP13.71□□□□□ -0.21
LINC00239-201ENST00000556973 TCERG1O14776 1098 aaKnown RBP13.71□□□□□ -0.21
LINC00239-201ENST00000556973 NTSR2O95665 410 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 SRGNP10124 158 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 TRIM28Q13263 835 aaKnown RBP13.71□□□□□ -0.21
LINC00239-201ENST00000556973 ERFEQ4G0M1 354 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 NLRP10Q86W26 655 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 TRMT2AQ8IZ69 625 aaKnown RBP13.71□□□□□ -0.21
LINC00239-201ENST00000556973 TTLL6Q8N841 843 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 ZNF622Q969S3 477 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00239-201ENST00000556973 MASTLQ96GX5 879 aa13.71□□□□□ -0.21
LINC00239-201ENST00000556973 RNF123Q5XPI4 1314 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms