RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TTLL13PA6NNM8 815 aa13.8□□□□□ -0.2
SCFD1-220ENST00000556486 RPS6KA4O75676 772 aa13.8□□□□□ -0.2
SCFD1-220ENST00000556486 PSEN1P49768 467 aa13.8□□□□□ -0.2
SCFD1-220ENST00000556486 ZNF831Q5JPB2 1677 aa13.79□□□□□ -0.2
SCFD1-220ENST00000556486 TJP1Q07157 1748 aa13.79□□□□□ -0.2
SCFD1-220ENST00000556486 CNTNAP4Q9C0A0 1308 aa13.79□□□□□ -0.2
SCFD1-220ENST00000556486 CRKLP46109 303 aaKnown RBP13.78□□□□□ -0.2
SCFD1-220ENST00000556486 RC3H1Q5TC82 1133 aaKnown RBP13.78□□□□□ -0.2
SCFD1-220ENST00000556486 KDM6AO15550 1401 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-220ENST00000556486 AFDNP55196 1824 aaKnown RBP13.78□□□□□ -0.2
SCFD1-220ENST00000556486 TESPA1A2RU30 521 aaPredicted RBP13.77□□□□□ -0.21
SCFD1-220ENST00000556486 SEMA3EO15041 775 aa13.77□□□□□ -0.21
SCFD1-220ENST00000556486 CABP4P57796 275 aa13.77□□□□□ -0.21
SCFD1-220ENST00000556486 EIF4A2Q14240 407 aaKnown RBP13.77□□□□□ -0.21
SCFD1-220ENST00000556486 USP42Q9H9J4 1324 aaKnown RBP13.77□□□□□ -0.21
SCFD1-220ENST00000556486 SLC24A3Q9HC58 644 aa13.77□□□□□ -0.21
SCFD1-220ENST00000556486 POLKQ9UBT6 870 aa13.77□□□□□ -0.21
SCFD1-220ENST00000556486 PPP1R37O75864 691 aa13.76□□□□□ -0.21
SCFD1-220ENST00000556486 LHX8Q68G74 356 aa13.76□□□□□ -0.21
SCFD1-220ENST00000556486 ZNF530Q6P9A1 599 aaPredicted RBP13.76□□□□□ -0.21
SCFD1-220ENST00000556486 ADAMTS7Q9UKP4 1686 aa13.75□□□□□ -0.21
SCFD1-220ENST00000556486 ERVV-2B6SEH9 535 aa13.75□□□□□ -0.21
SCFD1-220ENST00000556486 POLRMTO00411 1230 aaKnown RBP13.75□□□□□ -0.21
SCFD1-220ENST00000556486 SLC39A7Q92504 469 aa13.75□□□□□ -0.21
SCFD1-220ENST00000556486 VEGFAP15692 232 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-220ENST00000556486 USPL1Q5W0Q7 1092 aa13.74□□□□□ -0.21
SCFD1-220ENST00000556486 MKRN1Q9UHC7 482 aaKnown RBP13.74□□□□□ -0.21
SCFD1-220ENST00000556486 GLTPD2A6NH11 291 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 C7P10643 843 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 NFATC2IPQ8NCF5 419 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 POLR3GLQ9BT43 218 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 TMEM106CQ9BVX2 250 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 DLEC1Q9Y238 1755 aa13.73□□□□□ -0.21
SCFD1-220ENST00000556486 LMNB1P20700 586 aa13.72□□□□□ -0.21
SCFD1-220ENST00000556486 AEBP1Q8IUX7 1158 aa13.72□□□□□ -0.21
SCFD1-220ENST00000556486 CARMIL3Q8ND23 1372 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 POTECB2RU33 542 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 ZPR1O75312 459 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 POTEJP0CG39 1038 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 TM4SF1P30408 202 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 MTHFSP49914 203 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 EIF4G2P78344 907 aaKnown RBP eCLIP13.71□□□□□ -0.21
SCFD1-220ENST00000556486 INTS5Q6P9B9 1019 aaKnown RBP13.71□□□□□ -0.21
SCFD1-220ENST00000556486 METRNQ9UJH8 293 aa13.71□□□□□ -0.21
SCFD1-220ENST00000556486 NFKBIEO00221 500 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 NFIXQ14938 502 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 PLEKHO1Q53GL0 409 aaPredicted RBP13.7□□□□□ -0.22
SCFD1-220ENST00000556486 DNAJC10Q8IXB1 793 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 FBXO22Q8NEZ5 403 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 TRIM35Q9UPQ4 493 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 CACNA1SQ13698 1873 aa13.7□□□□□ -0.22
SCFD1-220ENST00000556486 FOXN1O15353 648 aa13.69□□□□□ -0.22
SCFD1-220ENST00000556486 HSP90AB1P08238 724 aaKnown RBP13.69□□□□□ -0.22
SCFD1-220ENST00000556486 BICDL1Q6ZP65 573 aa13.69□□□□□ -0.22
SCFD1-220ENST00000556486 C2CD5Q86YS7 1000 aa13.69□□□□□ -0.22
SCFD1-220ENST00000556486 CCDC24Q8N4L8 307 aa13.69□□□□□ -0.22
SCFD1-220ENST00000556486 NRXN2Q9P2S2 1712 aa13.69□□□□□ -0.22
SCFD1-220ENST00000556486 SCN11AQ9UI33 1791 aa13.68□□□□□ -0.22
SCFD1-220ENST00000556486 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
SCFD1-220ENST00000556486 TTLL6Q8N841 843 aa13.68□□□□□ -0.22
SCFD1-220ENST00000556486 PANK3Q9H999 370 aa13.68□□□□□ -0.22
SCFD1-220ENST00000556486 VIRMAQ69YN4 1812 aaKnown RBP13.68□□□□□ -0.22
SCFD1-220ENST00000556486 COL11A2P13942 1736 aaPredicted RBP13.67□□□□□ -0.22
SCFD1-220ENST00000556486 ZC3H4Q9UPT8 1303 aaKnown RBP13.67□□□□□ -0.22
SCFD1-220ENST00000556486 HSPA5P11021 654 aaKnown RBP13.67□□□□□ -0.22
SCFD1-220ENST00000556486 SLC39A6Q13433 755 aa13.67□□□□□ -0.22
SCFD1-220ENST00000556486 EFCAB3Q8N7B9 438 aa13.67□□□□□ -0.22
SCFD1-220ENST00000556486 ANKRD31Q8N7Z5 1873 aa13.67□□□□□ -0.22
SCFD1-220ENST00000556486 SOS1Q07889 1333 aaPredicted RBP13.66□□□□□ -0.22
SCFD1-220ENST00000556486 POTEB2H3BUK9 544 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 ZMYND10O75800 440 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 SERPINB2P05120 415 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 PCGF6Q9BYE7 350 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 BCL2L12Q9HB09 334 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 ZBTB1Q9Y2K1 713 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 COL15A1P39059 1388 aa13.66□□□□□ -0.22
SCFD1-220ENST00000556486 DICER1Q9UPY3 1922 aaKnown RBP13.66□□□□□ -0.22
SCFD1-220ENST00000556486 C21orf2O43822 256 aa13.65□□□□□ -0.22
SCFD1-220ENST00000556486 AMOTQ4VCS5 1084 aa13.65□□□□□ -0.22
SCFD1-220ENST00000556486 SMYD5Q6GMV2 418 aa13.65□□□□□ -0.22
SCFD1-220ENST00000556486 ZNF622Q969S3 477 aaKnown RBP eCLIP13.65□□□□□ -0.22
SCFD1-220ENST00000556486 POTEFA5A3E0 1075 aa13.64□□□□□ -0.23
SCFD1-220ENST00000556486 H0YIN7 160 aa13.64□□□□□ -0.23
SCFD1-220ENST00000556486 ERFEQ4G0M1 354 aa13.64□□□□□ -0.23
SCFD1-220ENST00000556486 LGR6Q9HBX8 967 aa13.64□□□□□ -0.23
SCFD1-220ENST00000556486 NARFQ9UHQ1 456 aa13.64□□□□□ -0.23
SCFD1-220ENST00000556486 FER1L6Q2WGJ9 1857 aa13.63□□□□□ -0.23
SCFD1-220ENST00000556486 DDNO94850 711 aaPredicted RBP13.63□□□□□ -0.23
SCFD1-220ENST00000556486 CYP19A1P11511 503 aaPredicted RBP13.63□□□□□ -0.23
SCFD1-220ENST00000556486 CANXP27824 592 aaKnown RBP13.63□□□□□ -0.23
SCFD1-220ENST00000556486 SULT6B1Q6IMI4 303 aa13.63□□□□□ -0.23
SCFD1-220ENST00000556486 DPY19L2Q6NUT2 758 aa13.63□□□□□ -0.23
SCFD1-220ENST00000556486 IER5LQ5T953 404 aa13.62□□□□□ -0.23
SCFD1-220ENST00000556486 CNTNAP1P78357 1384 aa13.61□□□□□ -0.23
SCFD1-220ENST00000556486 VEGFBP49765 207 aa13.61□□□□□ -0.23
SCFD1-220ENST00000556486 FAM161AQ3B820 660 aa13.61□□□□□ -0.23
SCFD1-220ENST00000556486 MORC1Q86VD1 984 aa13.61□□□□□ -0.23
SCFD1-220ENST00000556486 ZNF330Q9Y3S2 320 aaPredicted RBP13.61□□□□□ -0.23
SCFD1-220ENST00000556486 SLX4Q8IY92 1834 aa13.6□□□□□ -0.23
SCFD1-220ENST00000556486 LBX1P52954 281 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms